Ll_transcript_380281

• Id Trinity: TRINITY_DN51450_c2_g1_i12
• Name Transcript: Ll_transcript_380281
• Sequence: TTTCATTATTATGATTATTTTGGAAATTATTACTGTGCAAAATTGAAATTACAAAAGGGAAAAAGAAAGGTTACTCGTGTATGTGTGAGACACTGTAGGG TCTCTTTCTCTCCGGTGCTATCGTCGGAATTTCCGATCACCAAATTGGATCCAATCTCGAAACCCTTATTTTTCCGATACTTACGAAAAATCGTATTTAT CTAATAAAATATTCATTCTTTGTTTGTTTCTTAGTTATCCAATCGAATTTTTGAGTGGTTAGGGATGGATGATTACGTCATCAGCGACGACGATTACCAA TATTCCGACGATCAAGATGATTCCGTCGAAGCTTACGAAAACGATGAAACCGATTATCAGTTGATTACTTCCAAAGGCCCAAATACTCAGGTGTTATTTC CATTACCGTAGGGTTTTCATTTTTCTTATTTTGTTTTTACAATAAAGTTGAGTTTTTTGTATGCTTTTCTGTTTTGTTTCAACGTATCTAAAAGCATTTT TCACTTACTATGCGTTCTGAATTGGATTTAATACCGTCAAGTGCATTATATTTGATCTTATGTTAATATAGGTTTCTCTGGAAGATTGGAACTCTATAAT GTTTTGGCTGAAGTTTTTATTTTACTGGTGTGTTTCTTACAAAATTGGGGATTTTTATATTTTTTGAAAACAATGTTTTTACAAACTATGTGCCTGGTTC AGTTTCTGTTCTGTCTGGAACATTGTTTTCAATTATTATGTGTGTATCAGCTGTCATGTTTGTGATTTATGGTTGGTCTTTGGTTACATGATCAATCTTT GAATTATGGTTATCTTTACATGCATTTCCTTGCACTAATCATACTCTGCAAATATGCTTTGTGATTTGCAGGTGATTACAAAAGAGTCACTGCTAGCTGC ACAGAGGGAGGATTTGCGGCGGGTGATGGATATGCTATCAGTGAAAGAGCAACATGCACGGACCCTGCTTATTTATCATTGTTGGGATGTGGAGAAGTTG TTTGCAGTGTACGTGGACAAAGGGATATCACATCTCTTTGCTGAAGCTGGTGTTACCATGGATAAACATCATCACTCTGATTCGTCATTCCGTTCTTTAA TAATGTGTGAAATCTGTATGGAGGATGTTCCTATTGATGAAGCAACAGGAATGGACTGTGGTCACAGTTTTTGCAACACATGTTGGACGGAGCATTTTGT TGTCAAGATAAATGAGGGCCAAAGTAAACGCATTAGATGCATGGCTCATAAATGCTATTCCATTTGCGATGAAGCTGTTGTAAGAACGCTGCTTGGTAGA AAGCACCCTGATATGGCCGAGAAATATGAACGCTTTCTTCTTGAATCCTACATTGAAGACAACAAGAGAGTTAAATGGTGTCCTAGCACGCCTCATTGTG GGAATGCAATACGTGTTGAGGATGATGAATTATGTGAGGTAGAATGTTCATGTGGTTTACAATTTTGTTTTAGTTGCCTGTCAGAAACACACTCCCCATG TTCATGTGTGATGTGGGAGCTTTGGGCTAAGAAGTGTCGAGATGAATCAGAAACTGTTAATTGGATGACAGTTCATACAAAACCTTGTCCAAAGTGCCAC AAGCCAGTGGAGAAGAATGGTGGGTGTAACTTGGTTAGCTGTATATGTGGCCAACCATTTTGTTGGGTGTGTGGTGGGGCCACTGGCCGAAATCATACTT GGTCAAGTATAGCTGGCCATAGCTGTGGTCGCTACAAAGACCAAGAAAAATCAGCTGAACGAGCAAAGCGGGATCTATATCGTTATATGCACTATCATAA CCGTTACAAAGCTCACACAGACTCCTTTAAGCTTGAAAGTAAACTGAAAGAGACTATACAAGGGAAGATTGATATTTCAGAAGAAAAGGATTCTAAACTC AGAGATTATAGCTGGGTAATTAATGGCCTCTCCAGACTTTTCAGATCTAGGCGTGTCCTATCATATTCATATGCATTTGCATTTTATATGTTTGGAGATG AGCTTTTTAAGGACGAAATGTCAGAAGCTCAAAGGGAAATAAAACAGAACTTATTCGAGGATCAACAGCAGCAGCTTGAGGCAAATGTTGAAAAGATCTC TAAAATTTTGGAGGAGCCTTTTGATACCTTTCCTGATGATAAGGTTATGGAGATAAGAATGCAGATAATCAATCTGTCGGCAGTTATTGACAAACTTTGT CAAAAAATGTATGACTGCATCGAGAATGATTTGTTGGGTTCTCTCCATCAAACTCACAACATAGCTCCATACAAGTCAAAGGGCATAGAGAGGGCATCCG AACTATCGGTTTGGAGCAATAAAGCTAATAATACTGGTATATATCTGTTGTAGGTTTTTAATTTAGTGCTAACAACCAAAGTTTTTGCATTAGCTAATTA TGAATCAGCTAGTTTTTGATGGTTTTGATTTGTGGCAACATTCTTTTAGTACTTTATGGTTTTATGGTATTGACATATCGCATCTATAGTTGTTGTTGTG TGTCAATATTGTTTAGTTTTAGAAAGGGGAGGATTGAAGGAGGGAGAGAAAAGGCTTAGTCAGAATAATAAGGTCCCCTTTGATCTAAGAAAACATTTTC ATTTTTCATATGCTACTATTGTTGACTTTGTACTTTAATACATGATATTTCATTTTCAATTTTCACTAATAATTTCCCTTCTTACCCCAATAAGAAGACT CACTCAATTATCATTATGTTGCTTATATATTTATGGGCTACAGACCTATATGTAGATAGTTGTGGTGTTCAACTGTTTCAAGCAAGAGACAGAGTAAGTT GCACTGTATAGAAAAAATATTTTGTAAGCACATTCATGAAGGGTAAAATATATGGATGAGGGACCAGGGCCCACACTTTCCCCTCTCTCCATCCCTGCCG CTATGTGGTATTGAATATTCTTACTGGTGTATTAATTTCTTTCAGTTTACCTGGAAAAATTATGACATGAAAATATGCTGTCAAATGTTAATTCATGTTT GAGCTTTTTTATTGCATGATGTTATGAATGTTCTTATATATCCCGGCTTCATTTTGACACTATGGATGCTCATCAGAAATGTTAACTGAGTGAAAAGGAT TATTGTGCTGCAAATGTAGGTAGAATAGCAGAAGTTGATCGGCCTTCTGGATCAGGGAGCTCAGATGACCACAAATGTTCTTCTCATAAGCGTGCTAGAA CAGAAAGTGTTGGAGGTCGTGGTGGTGCCTTTTTTGATCTAAACTTGCCAGCAGAGTTTGTAGACAGAAATTGACTTTGAAGGAGGAGACCTTATATACA CACAGGTGTACATGGCTAACAGAAATTGCTTTTGCTGCCTTGACCGAGTTAATCATTTTGGTCATGATATGACATCCATGGATGCAATTTACCCTCCATT TGCCTCAATCCTGCTTCAAATCCTGGGGCTGTGTATATATATATAGCCTTGAGGCATTTATTTACTAATAGTTTATGTCAAATGTGTATTTGTGTTTTGA GCACCCTGAGGACAAGTTGTAGGATGCTTTCATTGGTATCTTATGGAGTTGCAAATAAAAGTAACTTCACTGATTTTTTTTCATTGTTTTTCTCCTTCTA CTCTGTTACTTTTCTCTTTAAGACAGACAATTTTCACATGAAATTTCTTTCTAAAAA
• Tissue: pods
• Gene name: LI_gene_185015;
• Additional information: details;

Expression of Ll_transcript_380281

FPKM

• PAB: 0.3
• PNAB: 0.6
• PS1: 0
• PS2: 0
• PS3: 0.5
• PW1: 0.2
• PW2: 0.2
• PW3: 0.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_380281

• Blastp: Probable E3 ubiquitin-protein ligase ARI1 from Arabidopsis with 71.34% of identity
• Blastx: Probable E3 ubiquitin-protein ligase ARI2 from Arabidopsis with 72.78% of identity
• Eggnog: RING finger) protein(ENOG410XP9Y)
• Kegg: Link to kegg annotations (AT4G34370)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019454167.1)
• Pfam: IBR domain, a half RING-finger domain (PF01485.20)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;