| Id Trinity | TRINITY_DN51455_c0_g1_i12 |
|---|---|
| Name Transcript | Ll_transcript_380797 |
| Sequence | GCCAGCAACATAATCATCATTCCCGTTTATCTTCTTTCCCCATTCATTTCGTTAAACCCTATAAAACAAAATCTCTCCAACGACGTTGTTTTGGAGCGAA CAATGAACACTTTCACCCTCACCCCTTCTTCTTCTTCCCACACCCACCGCCCCTTTCTTCTTCCCTCTCCCTTACTCAACCCTACCCTCACTCAGCGACG TCGTTTTAGGCTCCCCTACCCTCGTTGTTCCTCTACCTCCGATCAAGACCGCGCTACCTCTTTGCCGCCACCGCGAGCTCCGAAGGAGCTCAAGGGAATT GAAATTCTAGTCGATAAGCTTTCGCCACCGGCGAGGCTAGCCACTTCTGCCGTCGTCCTTGCTGGCGCTGTCGCCGCTGGCTATGGTCTTGGATCACGGT TTGGCGGTTGCCGGAACGCAGCAATTGGAGGGGCTGTAGCTCTTGGCGTGGCCGGTGGTGCGGCGACTTATGCATTAAACGCGGCTGCTCCGCAAGTGGC AGCTGTGAATTTGCATAACTATGTTGCCGAGTTTGACGACCCGGCTAAGTTGAAGAAGGAAGATATTGAATCCATTGCGAACAAGTATGGTGTTAACAAG CAAGACGAGGCGTTTAAAGCTGAGATTTCTGATATATATGCTGAGTTTGTGTCTTCTGTGCTTCCTCCTGGTGGGGAGGAACTTAGAGGGGATGAGGTTG ATAAGATCGCCAATTTCAAAAATTCTTTAGGAATTGATGACCCTGATGCAGCTGCTATGCACATGGAGATTGGTAGGAGATTTTTTAGGCAAAGGCTGGA AGTTGGGGATCGCGAGGCTGATATTGAGCAACGCCGGGCATTTCAAAAGTTGATATATGTGTCAAATCTTGTATTTGGAGAAGCGTCATCTTTCCTTCTT CCCTGGAAGCGTGTTTTCAAGGTTACTGATTCCCAGGTTGAAGTAGCTATACGTGACAATGCCCAACGGTTGTATGCTTCCAAGCTGAAATCAGTTGGAA GAGATATTGATGAGGGGCAACTTGTTAGACTTCGAGAAGCACAACACTTGTGTCGCCTTTCTGATGAGCTTGCTGAGAACTTGTTTAAAGAGCATGCAAG AAAATTGGCCGAGCAAAATATTTCAGCGGCGCTTGTTATGCTTAAATCTCGCACAAGAGCTGTTCCGGGAGTTAACCAAGCAGTTGAAGAGCTGAATAGC TTATTGGCATTCAATAATTCACTCATCTCATTTAAGAACCACCCAGATGTGGATCGGTTTGCCCATGGTGTTGGTCCAATTTCTTTAGGGGGTGGTGAGT ATGATGGAGACAGAAAGATAGAGGACTTGAAACTCCTTTACAGGGCATATGTTTCAGATAGTTTGTCTGGGGGGCGCATGGAAGACCATAAGGTAAATGA CCATTACAGTCAAATATAAACCACAGACTCCTTCATATGTTTCTCTATAAACTAAGAAATTTTGAAGTTGAGTTTGGGTTAGTGTTTTTCTCAGGTATGA TTTGATTGAATACTTTATTTTCTGCAAAAATGTAAGGGAGTATACACAGGCTATTTACATTTGGACATGATGAATGGAATATATCTTTTGCTATATCACT CTCTGCGCTTTCTTATAATGATATCTTCCGAGTTCCAACGTGGCTTATGATAGGCTGCCAATCTGTGTTTGCTGTAGAAGAAAGGAAATGAGGGTTAGGT AGGGGGCAGAGGGATATGAGGATTATGTGAGGAGGGAAAGAGATCTAACTTACTGGACCCGTGGCACACGGGGATTGGTAATGAATATGCTGGAGTCATG CAAGCAAGTGTTATGATGGATAGAGAGGGGTGTGAAGGGAATCATCTGTTTAATGTGGGGTTGGCTGAGGTTATTTCTAGCAGACATAGTTCCTTGCTTC TCCGACTTTTATGTCTTTTATCTATTTTCTGTAACCAGAGCTTGCTCCTTGCCATTTTCCACTATTTTCTCTTGTTAATACCAGAACTTATCAGTTTGGT ATCAGACTATCTGAGTCCCTGATCCCAGCGAGCCTGTGGATGTTATCAACAAAGGTCAAAGGCCTATCAATTCCCGCTCCTTTCCCCTTATTAATAGCAG AATCTATCAGTTTCTAACACTTTCCTTGTGTGCAACTGTGTGTTCAAGCATTAATGAAGACTGAACTCGTGCTGTTTAACTTTCCTGGGAATTCTTCATG GTCTATTATGCTATTTTCCGTTCAACGTAGTACCAAAGCCTGATGTTAGTGGTTGTTTAGTACATGCTGCCAAATTGTTGCTTGTCTTTATCTCATAATA ATTTCAATTTAAAGCTGTATTTATTGTGTACACTGTTGGCCCATTGCTTAACACACTAACTGAAGCTTTTGGGTCTGGTACTCTCTTGACTGTTAAGATG TACGGACATAAGATTTCCTCTTTGAATATGGTTACATTTTCTCTTAAGCTTTCATGAATCAGCACTCGGGTAAACAAAGACCCAACTACATTCCAAAACC ATGATTCCGCCAGTATAAAAAGTAAAACTTGTTATGGATATAAGTTATGAAACTTGACCTCTATAAACACTCATTTTTTAATGTAAATTTATTTTGAAAA ATCTATTCATATTTCATTTCAGCTAGCTGCACTTAATCAGTTAAGAAATATATTTGGGCTGGGTAAACGTGAAGCTGAAGTCGTTTCACTGGATGTTACA TCCAAGATATATCGTAAACGACTTGGACAGGCTGTTTCTGGCGGTGAGTTAGAATTGGCAGATAGCAAAGCAAAATTCCTGCAAAATCTATGTGATGAAT TGCATTTTGATCCACAAAAGGCCAGCGAACTTCATGAAGGTAGACCTTGTTATGTGACATCTTTTGTTATGTTTACAGCTAGTTGAAATTTTACCATATT TAAAGCTTGGATTAGTCAACATTTATTTGTGTGATTCTCAACAATAATATTCAGTTATTGATCTGTTTCTTAGTTGTTCTAATTGTTAACTTTTTGTATT ACGTGTCTTTTATCTTTCTTTACATTGTATTTAATTCATTAAAAGTTGAAAACACAATCTAACGATAGTTTGTTTTTAAGAAATTTACCGGCAAAAGCTT CAGTGTTGTGTAGCTGACGGGGAACTCAGTGAGGAGGATGTTGCTGCTTTGTTGAGGCTGCGTGTAATGTTATGTATACCTCAACAGACCGTGGAAGCTG TTCACTCAGACATCTGTGGCAGTTTGTTTGAAAAGGTTGTCAAGGAAGCAATTGCGTCAGGGGTTGATGGATACGATGCTGATATCAAGGAATCTGTAAG AAAATCAGCACATGGCTTGCGACTTACCCGGAAGACTGCTATGTCTATTGCCAGCAAGGCAGTAAGGAAGATATATATTAATTACATAAAACGTGCACGA GCAGCTGGAAGTCGTACAGAGTCTGCAAAAGAACTGAAGAAGATGATAGCTTTTAACACCTTGGTTGTGACTGAGTTGGTGGAGGACATTAAAGGAGAGT CCGCTGATGTTTCAACTGAAGAACCTGTGAAGGAGGTGGACATCACACAAACAGTAGATGAAGATTGGGATTCACTTCAGACACTTAAGAAAATAAGACC CGACAAAGAACTTATAGCAAGGATGGGAAAGACTGGTCAGACGGAAATTACTCTTAAAGATGACCTTCCGGAAAGGGACAGGACTGATCTTTACAAGACA TACTTGCTTTTCTGTCTAACTGGTGAAGTGAAAAGGGTTCCATTTGGTGCCCAGATTACTACAAAGAAGGATGATTCAGAGTATGTTCTTCTAAACCAGC TTGGTGGGATCCTGGGATTGACTGGTAAAGAAATAGTGGAAGTACATAGGGGTCTAGCTGAGCAAGCTTTTAGGCAACAAGCAGAGGTCATTTTAGCTGA TGGACAGTTGACAAAGGCGAGGGTGGAGCAGCTTAATAATCTGCAGAAGCAAGTGGGTTTACCTCAAGAATATGCTCAGAAAATAATCAAGAGTATAACT ACTACAAAAATGGCAGCTGCCATTGAAACTGCTGTAACTCAAGGGAGACTTAATATTAAGCAGATAAGGGAACTTAAGGAATCCAATGTTGATTTAGATA GTATGATATCCGGGAGTTTGAGAGAAATGCTCTTCAAAAAAACAGTTGATGGTATATTTTCATCAGGTACTGGAGAATTTGATGGGGAAGAAGTATATGA AAAAATCCCAGCAGATCTCAACATTAACAAAGAGAAAGCAAGAATTGTTGTTAGCGATCTTGCCAAAACTAAATTATCTAACTCGCTCATTCAGGCCGTG GCACTATTAAGAGTGAGAAATCATGCGGGCGTGGTTTCTTCCCTCAATGATTTGCTGGCTTGTGACAAAGCAGTACCCTCAGAGCAACTTTCATGGGAAG TGTCAGAGGAGCTTGCTGATTTGTACAGTATATATTTGAAGAGTGATCCAACACCTGAGAAATTGTCTCGTTTGCAGTATCTATTGGGCATAACTGATTC TACAGCAGCTGCTCTTCAGGAAAGGGGTGATAGATTACTTAACACTGCAGAGGAAGAGGAGTTTGTATTCTAGTTCTAGTGTGTTCCATGATCTCCCACC ATTATGTCATTTTTAATTTCCCATTTTGTTTAACGGTGAAAGAGAAACAATAATTTGATTATTGTAATAGAGATGAGTGCATTTTAGATGTTGGTGTCTC AGATAACCATTGTATTGTGAGTTATGTGACAGTTGAATTAATCGGTTGATGTTTTGTATGATGGAATATAGTACTCCATTGCTATACCACACCACTTAGT TTCCAATGGATGATGAGATTCTATTGAATAATTTTCATACTTTCTGAC BLAST |
| Tissue | pods |
| Gene name | LI_gene_185041; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_380797
| Blastp | Protein TIC110, chloroplastic from Arabidopsis with 73.89% of identity |
|---|---|
| Blastx | Protein TIC110, chloroplastic from Arabidopsis with 74.59% of identity |
| Eggnog | translocon at the inner envelope membrane of chloroplasts 110(ENOG410XRW7) |
| Kegg | Link to kegg annotations (AT1G06950) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019461129.1) |
| Pfam | Chloroplast envelope transporter (PF16940.4) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |