| Id Trinity | TRINITY_DN51477_c11_g1_i18 |
|---|---|
| Name Transcript | Ll_transcript_381780 |
| Sequence | ATACACTCATATACAGCTACTACATTCTCAAATTTTTATAATCACACATATATATGTATGTATGAGAAGTTTGTTAACGTGAAATATCAATCAAGGAGTA TGGAGGGTCTTGGTGGCAATCACAACCATGAAGATGATTACAACAACAGGGAACAACTTGATGTACAACCAAGATCCTCTTGGGCAGAGGTTGTCTCTGG AGAACAAGATCACCACACCCCACAGGATCATGAGGAGGAGTGGGAACCCCAAGGTTCTAGAATTTCAAACACATCCTACAAGCATGAGGAGGAGGAGGAA CATTGGCAAGATGATAGTTATAGGAGGACTTCAAACACTAGGCTTCATCAGTCGGATGAAAATAACGACGACGACGGATGGCAGATTGTTGGCAAAAAAC ATTCAAGGCAGCAACACAAGATTCAAAGGGATGGTTGGAACCAATATAAACTACCTTCTGATGAGCAACAATACTCTAATGAGGTTGAAATTGGTGATCG CGTTGAGCCTTCAGAGGATGAACTTACCGATCTGTCACGAGCTTGCGAAAAACTTTGGGATCTTGATTTAAATCGTTTGGTACCAGGCAAGGACTATGAG ATTGACTGTGGTGAAGGAAAAAAGGCTTTCCGCAAGGGTGATATGGCACAAAGGAGCTTGTTTACTTGGGTTAATGATGATGTATTCAGAAAGCCTACTT TCGGCCGATTTCTTTCGCTTTTAGATAATTACATCCCTCATCAAGGATGTGAGGAAGTTGTAACATCTGAACAGATTCAAGAGCAAGCTTCTTTCATTGA GGAACTCAGTAGAACAGCACCAATTAAATATGTTCACAGGTACCTTGCATCCAAAGGAATTGTATCAGGGAGCTACCAAGATTTCAAAAGAATGATGACT AGTCTGTGGTTTGATCTTTATGGTCGTGGTGGAACTTCTGGTTCCTCTTCTGCCTTTGAACATGTTTTTGTTGGAGAAATTAAACAAAACAATCAAGTTT CTGGCTTTCATAACTGGCTTCAGGTGAGACCCCCCGCTTCCTTTTTCTGCCTGTTAGGATCCATTTGGGTACGGGCAAACATTGTGGGTGGTGGAGGCAG TTGCCCTCACTGGAATTTAAACTTTTCTTAATATAATTATGTATTATTTGTGCAAATTTCCCCATGACATAGTAGTAATGTGTTATATTTATTGAACCAT AATCATCAAAGCCATCAAAAGCATAAGATGATTGAAGACAAAAGGATTAAAGTAGCTTAAAGTAAGCACAAATTTGTAGTTGTAATTTAGTGATGTATTA GTTGAAGGATAGGTTGTTGTTTTTATCCTTTTTAGTTTCTAGTCGATCACATGTAACTTGAGGTACTTAGTTGATTTAGTTGGTTAACAAGTTAGTTATC AGAGGGGCAATTGGTACCACCAAGGTATTGATCTAGTGGTGTAAGGTTCAATTTGATCCCTAGATAGACCAAAAAGTCAAAGGTTCGATTCTAGGGAGAA ACACTTGTTGGAAGGGGCAGCCACACATCCCGAAGGGGTTCCTTACTCATAGGGTGTGGCATACCCTTGATTATACCCAAAAAAATGGGCAATTGGTTGC TTCCAAAACAAGTTACTTGGTTCATTGTATATATACCAATTCACTTGGCTGATTTCTTCAATAGAATGAATTCTACAATTTCCACAAACACTTTCAATAT TTTAATTCTACATGTTTATGTGTATGTTGCCCCTATAACTTAAAATTTCTGAATCCACAGCTTGATCTATTGGAAACTCATGCCAAATCGAAGGTGTATT AACTTATTGAATGTCAAATTTGTAGCTCTTCTCAGCCATCATTCTTATATTACTACCCTCACTGATCATGCAATTACTATATTGTGAATCTTCTTGCCCC AGCTAGTAGTATCGCAAACCTAGCTACTAGCTACATGTAGACTAGCTTCATAGTTGATATTGCTAATAATACTTTGCAGCGATCTTATGTTTTCAATAAT TTTCCCAACCACCTGTTATATGTACAAGTCCTTATTCAGACCAGGTAGTTCCTTTTTTCCCTTAACCTTCTACCCTGCTTCTTTCTAATAATATTATAGA TGAAACTTAGGTGTTATTTTTAGGTATTTGTGATCCAATAAAAACATTACATGTATAACATCTCTTCCACATATTCTATATTGTATGTTTAATGGAAAAC ACCACCAAAAGCATCCCAAGAACAACACATAGGTTTTGTTATAATATTATGTATTCTAATTTGTGTAGTGATTGATCTATTAAATAAATAGATGTTGGGT TACATGGATATGTTTTGTTTCTTTAACTAGTAATATGAGTTTATCTTGTCATCGTGTGAAACTGTTATCTTACTGATGTATTTTGCAGTTTTACCATGAA GAAGCGAATGGGAGAGTTGATTATCAAGGCTATATCTTTCCCCGTCGGAGGGGAGAAATTCCGGACTCTGAAACGCAGCTTCTGACAATTCAGTTTGAAT GGAATGGTGTTCTGAAATCTGTTTCAAGCACTTTGATTGGAGTTAGCCCTGAGTTTGAAGTTGCTTTGTATACCCTGTGTTTCTATGCTGGTGAAGAGGA TAATCAGATTCAGCTTGGTCCATATTCAGTTAATATCAAGTGCTATCATCTTGGAGATAGAATTGGATCTGTTTTCCCCATTTCAGATTCTTGAATTTTC AGTTTCTACATATGATTGTATTTGGAGTTAACACATGTATCTTTGAAAGACCTAAGTGATGATTAAGTCTTGTATTTGTGCCCAATAATTCATGTCTTAT GTAAGCAATATCATTTAGTTTAATTATTACATGTTAGCACATTATTGAGAGAATTATGCACTTATTTGATGGCTCTGTCTAGTATAAAAAAATTCTTGTG CAACATGTTTTGCTTTTCTTATACTTTAAGTAAAAGTTCTCCT BLAST |
| Tissue | pods |
| Gene name | LI_gene_185196; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_381780
| Blastp | Poly(U)-specific endoribonuclease-B from Danio with 41.86% of identity |
|---|---|
| Blastx | Poly(U)-specific endoribonuclease-B from Danio with 41.86% of identity |
| Eggnog | Poly(U)-specific(ENOG410XX8E) |
| Kegg | Link to kegg annotations (553584) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019446020.1) |
| Pfam | Endoribonuclease XendoU (PF09412.9) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |