Id Trinity | TRINITY_DN51477_c11_g1_i2 |
---|---|
Name Transcript | Ll_transcript_381764 |
Sequence | TTCACACACCAGGCCTCATCAGGTGAACAGTTATTGTCTGTTATTGTTAAATCAAATACTGCACTAATACTTTCGGATTTTAACTAAACTGATGCAAATT ATTGAGTCTTTTTTCCCCATTATTCATCAATAACAACCGAACCTTTATCCTACTATGTGAGATCGAGCACATGGATCGAACGGTGATGCCATAATTCTGT TATAAATCATGTTCATCAACAAAACATTGATCTTTGAGCTTTTCTTAATCATTTCGTTTATGATTTTTCTTGATCTCTCTTCCTTTAGGAATTGGACTAA CCTCCATTTGATCTACTCTCTTTATGAGGCAATCACAGAAAATGTTATTTTGAGCGATTGTTTTTCCAATATAGATGTGTTGAGGTAGGTGTTAGTGGAT ATTAAGTTATACTGTGTTTTAAGATAAAGTGGATGTAGTATATGACTCCTCTAAAGTGAGTTGGAGCCTAGAGTGAGCTTGTAAAGGTGTATCAATTCTT GATTAGTTAAAAACTAAAGTGGGTTGTGATCCTTACTTGCTCACTTTACACCCAAACTCGGTATGAGTGAGTGTTGAGGTTCCAAGATGTTGTAAATGTA CTTTATGGAGGCATTTGATACTATAAATGAATCTTATACTCTCATTTAGTACATCAAGACAACCAAACCAAAAAGAAAAGAAGAAAGACATTATCTAGTC CTTAATATTGCCACTCTTTGTGAAATTTCATTGCTGAGAAAAAAACATGAGAGTATCTGTCTCCGTGAGAGTGAGAGATGTATCAAATGTGAGTTTGCAG GTAATAAAGTTATTCATATTATTAACTTTGCAGGAACAATATCGTCCTAAGCAGGGGGATTTGGAATCTGAGAGTTTCAACACTTCCAACAGACCCCACA AGTCAAATGAAGATAACAATGATGGATGGCAGACTGTTGGTGATAAACATTCAAGGCAGCAACACAAGGTTTCTCTTTAAATTTTATCAAATATATCAAA TAGAAAAACTTATGGCATTGCATGTTGAGTGTTGTTGATCAATTTATAAAGTTTGTATTATAATAGTGCTGCTGTTATGGGCATATCTTCTGAGTTCTAC TATATTTTAATTCTGACATCAAATGTGTGATGTAATTAGTCCTAACATTTTATGCTGCATCAATATCTGAGTGATGAATATTACCAACTTGATGACAGGT TCCAAAGGATAACTGGAACCAATATAAACTACCTTCTGATGAACAACAATACTCTAGTGAGGTTGAGGTTGGTGGTAGTGTGGAGCCTTCAGAAGATGAA CTTACTGATTTATCACGAGCTTGTGAAAAACTCTGGGATCTTGATTTAAATCGTTTGGTACCTGGCAATGACTATGAAATTGACTGTGGTGAAGGGAAAA AGGTTTTCCAAAAGGATGATATGGCACAAGGAAGCTTGTTCACTTGGGTTAATGATGACGTATTCAGAAAGCCTACTTTTTCTCGGTTTCTTTCGCTTTT AGATAATTACAACCCACATCAAGGAAGTAAGGAAGTTGTCACCTCCGAAGAGAAGCAAGAGCAAGCCTCTTTCATAGAAGAAATCAGTAGAACAGCACCA ATTAAATATCTTCACAAGTATCTTGCATCCAAGGGAATTGCTTCAGGGAGCTACCAAGATTTCAAAAGAATGATGACTAGTCTGTGGTTTGATCTTTATG GTCGTGGTGGAACTTCTGGTTCCTCTTCTGCCTTTGAACATGTTTTTGTTGGAGAAATTAAACAAAACAATCAAGTTTCTGGCTTTCATAACTGGCTTCA GGTGAGACCCCCCGCTTCCTTTTTCTGCCTGTTAGGATCCATTTGGGTACGGGCAAACATTGTGGGTGGTGGAGGCAGTTGCCCTCACTGGAATTTAAAC TTTTCTTAATATAATTATGTATTATTTGTGCAAATTTCCCCATGACATAGTAGTAATGTGTTATATTTATTGAACCATAATCATCAAAGCCATCAAAAGC ATAAGATGATTGAAGACAAAAGGATTAAAGTAGCTTAAAGTAAGCACAAATTTGTAGTTGTAATTTAGTGATGTATTAGTTGAAGGATAGGTTGTTGTTT TTATCCTTTTTAGTTTCTAGTCGATCACATGTAACTTGAGGTACTTAGTTGATTTAGTTGGTTAACAAGTTAGTTATCAGAGGGGCAATTGGTACCACCA AGGTATTGATCTAGTGGTGTAAGGTTCAATTTGATCCCTAGATAGACCAAAAAGTCAAAGGTTCGATTCTAGGGAGAAACACTTGTTGGAAGGGGCAGCC ACACATCCCGAAGGGGTTCCTTACTCATAGGGTGTGGCATACCCTTGATTATACCCAAAAAAATGGGCAATTGGTTGCTTCCAAAACAAGTTACTTGGTT CATTGTATATATACCAATTCACTTGGCTGATTTCTTCAATAGAATGAATTCTACAATTTCCACAAACACTTTCAATATTTTAATTCTACATGTTTATGTG TATGTTGCCCCTATAACTTAAAATTTCTGAATCCACAGCTTGATCTATTGGAAACTCATGCCAAATCGAAGGTGTATTAACTTATTGAATGTCAAATTTG TAGCTCTTCTCAGCCATCATTCTTATATTACTACCCTCACTGATCATGCAATTACTATATTGTGAATCTTCTTGCCCCAGCTAGTAGTATCGCAAACCTA GCTACTAGCTACATGTAGACTAGCTTCATAGTTGATATTGCTAATAATACTTTGCAGCGATCTTATGTTTTCAATAATTTTCCCAACCACCTGTTATATG TACAAGTCCTTATTCAGACCAGGTAGTTCCTTTTTTCCCTTAACCTTCTACCCTGCTTCTTTCTAATAATATTATAGATGAAACTTAGGTGTTATTTTTA GGTATTTGTGATCCAATAAAAACATTACATGTATAACATCTCTTCCACATATTCTATATTGTATGTTTAATGGAAAACACCACCAAAAGCATCCCAAGAA CAACACATAGGTTTTGTTATAATATTATGTATTCTAATTTGTGTAGTGATTGATCTATTAAATAAATAGATGTTGGGTTACATGGATATGTTTTGTTTCT TTAACTAGTAATATGAGTTTATCTTGTCATCGTGTGAAACTGTTATCTTACTGATGTATTTTGCAGTTTTACCATGAAGAAGCGAATGGGAGAGTTGATT ATCAAGGCTATATCTTTCCCCGTCGGAGGGGAGAAATTCCGGACTCTGAAACGCAGCTTCTGACAATTCAGTTTGAATGGAATGGTGTTCTGAAATCTGT TTCAAGCACTTTGATTGGAGTTAGCCCTGAGTTTGAAGTTGCTTTGTATACCCTGTGTTTCTATGCTGGTGAAGAGGATAATCAGATTCAGCTTGGTCCA TATTCAGTTAATATCAAGTGCTATCATCTTGGAGATAGAATTGGATCTGTTTTCCCCATTTCAGATTCTTGAATTTTCAGTTTCTACATATGATTGTATT TGGAGTTAACACATGTATCTTTGAAAGACCTAAGTGATGATTAAGTCTTGTATTTGTGCCCAATAATTCATGTCTTATGTAAGCAATATCATTTAGTTTA ATTATTACATGTTAGCACATTATTGAGAGAATTATGCACTTATTTGATGGCTCTGTCTAGTATAAAAAAATTCTTGTGCAACATGTTTTGCTTTTCTTAT ACTTTAAGTAAAAGTTCTCCT BLAST |
Tissue | pods |
Gene name | LI_gene_185196; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_381764
Blastp | Poly(U)-specific endoribonuclease-B from Danio with 44.35% of identity |
---|---|
Blastx | Poly(U)-specific endoribonuclease-B from Danio with 42.69% of identity |
Eggnog | Poly(U)-specific(ENOG410XX8E) |
Kegg | Link to kegg annotations (553584) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019446023.1) |
Pfam | Endoribonuclease XendoU (PF09412.9) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |