Ll_transcript_381546

• Id Trinity: TRINITY_DN51478_c0_g1_i3
• Name Transcript: Ll_transcript_381546
• Sequence: CTTTGCTTCTCTCTCTCAAAAAGCTACACCCTTTTCTTTCTCTCTGCTTCTTCTGTGTTCCAAAGGTTTCAAACGGAGAAGAAGAATAAGAAGCAAAGTG TAAAAAGATTTGAAAGGAATAAACAAATGATGGATGAATATTCTGGTAAAAGAACTACTGGTGCGGTGGTAGTTCCGAGAAAGGGAATGGGCCATGTCTT TAGAGATACTGCTAATACTAGAGACCGAAATGGTCAAGCTTGCAACCGCCTTGGTTGCAGTAGCAGAGTCAGCTCTCCTAAAGGTGCTCAAATCGGCTCT TCTGAGAAAGGTAAATCTCTGAGACCTTCAACCCGATCCTCTTCTAGTGTCAAGGAAGCAATGGGAAGTTCCTCTAGAACTTTCACAGGGACTAGTAACC CAGGAAAAACCTTTCTAAGGCCTCGGAAAACTTTGTCCTCTCAAGTAGAGGGAGATTCATCTGAAACAAGTAGCATACAGGATGAACCAGAACCTTCAAA CCTTGTCCCTCCACCTGAAAATATTAAGAGAGGGCTTCAAGCGGAAGTGGAAAATTCAGACTCTAGTGATGTCATGCCAATGGAAGCAGGGAGCTCTAGT GTAGCATCTAATACAAGATCTCGGAGGAATTTTCAGCCAAAGCCTGGATTGCGTGCTCAAGAAGTTAAAAGTGTCGGTCAAATTGTGCGTGCGGGTAACA GTAGGCCTGGGATGAGGAACCTCAGATGCAACTCTATATCTGATGTCATCCCATCAGGTGTCTGTTCATCATCTGATTCAACCCTTAACAGAAGCAAGGG TTTGATAAAAAAGAGAAATTGTGAAGGGGAAAGCAGTTCCAGTGCTAGAGGGAAGAACTTAACTGGGCCTTCATTTGAGGGACGGAATTCTGCTTCCAGA AATGGAATATCTATCTCTGATTCAAGAAGATCCAGAAATACTCCTTCCCTCGGGGACAGGCCAGAGAGAAATGTAGCATCAGTTAGGACACGAAGAGCAG TGAGTGGTCAAGCCAGAGGAAGGTTATCCAACCAAGGAAATGCTAATCCTGTGGCACCCAATGACTCTCTTGCAACGATTACTCCTTTGCCACGTTCTGG CGGTCTTAATGCTCCTTGTCTATCACATCATTCTTCTGTGGAGGCTACTTTAAGTCGTCCAGGCTCTTATATTATGCCAGCTACTAGCAGTGAGGAGTTA TATGGTGTTATGCCCACGTCTCCTTCAGAATATGGCATAACTCGTTCTCTAATAGGTCGGGAGGGCTTTCGACGCCGCTACAATATGGATGGTATTGCAG AGGTAATGTTGGCACTTGAGAGGCTTGAACAAGATGTTGAGCTAACACACGAGCAAATTCTTATGCTGGAGTCCAACTTGTTCCTTAATGGACTGAGTTT CTATGATCAGCATAGAGACATGCGGCTGGACATTGATAACATGTCATATGAGGAACTGTTAGCTTTGGAAGAGAGGATTGGTAATGTGAGCACTGCTCTC ACAGAGGAAGCACTATCAGAATGTCTGAAGAGAAGTTTCTATCAACCCTCACCCTCAGAGGATGAAGCCGAGAGTTGCAATGAGCATAAGAATGACACCA ATTGCAGCATCTGCCAGGAAGAATATTTGGTTGAAGATGAAGTCGGGAGTCTGAAATGCGAGCATAAGTATCACGCGGTCTGCATACAGCACTGGCTGAG GCTGAAGAACTGGTGCCCTATTTGTAAAGCACCAGTAGGGCCTTCAAATTCACCATCTTCATCACATTAATTGCACTGCATTGCATTGTTAGGCTATAGA CAAAATTCAGTTTCTACCCACCTCATTTTCTTTATATTTGTTATCACTTTTGTACAAAATTCAGTTTCTCCTCCTTGCCTTTTCTTATTGGTCATTTGTA CAGATATTACATCTCCATTATAACTTAATAACACAAGCCAATGGCTTGATAGACTCAAACATCTTCTTAAACTTTGGGTCCAATAGTCCCATCTAAATAA ATGTCCTTCCATAATGTCTTTTTTAG
• Tissue: pods
• Gene name: LI_gene_185211;
• Additional information: details;

Expression of Ll_transcript_381546

FPKM

• PAB: 22.5
• PNAB: 3.6
• PS1: 5.8
• PS2: 4.3
• PS3: 6.4
• PW1: 7.7
• PW2: 8.5
• PW3: 11.7

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_381546

• Blastp: Probable E3 ubiquitin-protein ligase HIP1 from Oryza sativa with 43.03% of identity
• Blastx: Probable E3 ubiquitin-protein ligase HIP1 from Oryza sativa with 43.03% of identity
• Eggnog: zinc ion binding(ENOG41121N2)
• Kegg: Link to kegg annotations (9272591)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019438353.1)
• Pfam: Ring finger domain (PF13639.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;