Ll_transcript_380479

• Id Trinity: TRINITY_DN51494_c2_g1_i27
• Name Transcript: Ll_transcript_380479
• Sequence: TCTTACTCTTCCTTTCTCTCTCTCTCTCTTTCTTTCTTTCTTTCTTTCCTTCTTTCTCTTTCTTCTCTGTCCTTACACGCACGGCACCTATATTAATAAT TGTACTCGCTATTTCGTTTACTCGCCGGTGGTCTCAACTCCACGCTCCGGCGATACCTTCACCGGAATCATCTCAATTCTCTCTTTCAACCCTCATTCCC ATCAATTGCAAGATCTTGCCATTTTCGTTTTCTTTTGCTGCGGTTTCGATTTGGGTAATCGTTGTGCTTCTCCGCTGAAGAAGTTTCCATGCTTGTTCCC TGTCAAGGAGGAAACCACTGTGTGTTAATGCGCTTGAGAGTTGGTTAATTCTTCTTGAACTCGGAATCTTTTTTGTTGGTAATTTTATCTGCATTGGCGG TTAACACTTTCCTGAATTGTATTCGGTCTGATCCGGCACCGTTCTTGAGCAATCTTGGAGTTTCGGAGTTGTAAAATTGGCGAATTTTTTGAAAAGGGAG GTTTCTTTGATTGAATTGGGAAATCTAGGGTTTCGTGATTGTTTGATGTTGTTGTGCATTGGGTGGTGGATGAAGACATTAGTGCGAGATGTGCAGGGTG AATACTAGAAAGAGCGAGAGCAATAACAAGAGCAAGCTTCAAGAACTAGGGTGGATGGGTTTGAAGAGGGTAGGGTTAGGGTTAGGGGTAGAGAGTAAAG TTGAGAAATTGAGGAATAGCATGGGCATGGGTGCTTCATCATCGTCGAGGTCTCGAATGAAGCTGTGGATGATACGCGCCACCACATCCATACTGCTATG GACTTGTATCGTTCAATTAACTGCATTGGGTGATATATGGGGGCCTAGAGTATTGAAAGGATGGCCTTCTTGTTTTACTCATGATTCTGCTGTTACTGCT CTTGATTCCCATTTCCCAACTCCGCCTCGTGTTCTTCTTCCTCCTAAGAGAGTTTATAAAAACAATGGATATCTGATGGTCTCGTGTAATGGAGGACTAA ATCAAATGAGAGCTGCGATATGTGACATGGTAGCCATTGCAAGATATTTAAATGTCACACTCATAGTCCCTGAACTTGATAAAGCATCCTTTTGGGCCGA TCCCAGTGAGTTCCAAGACATATTTGATGTGGATCATTTTATTGCGTCCTTGAGAGATGAGGTGCGCATATTGAAAGAGTTGCCTCCTAGACTCAAGCTG AGAGTGGAGAATGGGGCACTTTACACTATGCCACCTATTAGTTGGTCTGACATATCTTACTATCAGAACCAGATTTTGCCCTTGATACAAAAGTACAAAG TTGTCCATTTAAATCGAACTGATGCTCGTCTGGCCAATAACAACCAGCCTATCGAGATTCAGAAGCTGCGGTGCCGAGTTAACTTCAGTGCTTTGAGATT TACTCCTCAGATAGAGGAGTTGGGCAGAAAGGTGATCAAGCTTCTAAGGCAAAATGGTCCTTTTCTGGTACTTCACCTGAGGTATGAGATGGACATGTTG GCATTTTCTGGATGTACTCAAGGTTGCAACAGTGAAGAGGTAGAAGAGTTAACAAGGATGAGATATGCTTATCCTTGGTGGAAGGAAAAAATAATTAACT CTGATATGAAAAGAAAAGATGGCTTATGTCCTTTAACACCCGAGGAGACTGCCCTTACTCTTAAGGCTCTAGACATTGATCAGAACATTCAAATTTACAT TGCAGCTGGGGAAATATATGGAGGGCATAGGAGGATGGCAAGTCTTGCTAAGGATTACCCGAAATTGGTCAGGAAGGAAACACTGTTGGAACCATCAGAT CTTCAGTTCTTCCAAAATCACTCATCTCAGATGGCAGCATTGGACTATCTTGTCTCATTAGAGAGTGATATCTTTGTCCCCACGTATGACGGAAATATGG CCAAAGTCGTTGAGGGCCATCGCAGACATCTTGGGTACAAGAAGACGATTTTATTGGACAGAAAGCAACTAGTGGATTTGATTGATCAGTACAACAACGG AGTACTGAACTGGGATCAATTCTCTTCGGCAGTGAAGGAAGCTCATGCTGATCGCATGGGTAACCCAACGAAAAGAATGGTAATCCCTGATCGGCCCAAA GAAGAGGACTATTTCTACGCCAACCCAGAGGAGTGTTTAGAACCATCATCATATCTTCCGTTGAGTAGCACGTGAGTAACACGTTAGGAAAAAGTGGAAT TTACTCGCGCCACCATCTCCGGGTGCACATGATTTGGTTTTCTACCACAGATACTGAGGTATTTCCACTCAGTTATAGCGAAAGATCACATTTTTAACAA AGTACCAGTCATGGTGATCCATAAAGAAATAGAGGGTGTGGTGGAATGGATAATCAAACAAAGCAACAAAGGTGGAATACTTTATATTATATATATGCAA ATAATCCATTCCATTCATGTATAGAAGGTACCCTCTGATTATAGGGTGAAAGTAGTTCATAGCTGCATTGTACACAAGAGGGATTCATATACAAATTTGG ATTACTGCAACTTCAGTCCTTGGAAGCTTAAATTATTGGTACTTTCCTCTTTGATATAAGTATATATTTTTTATTTTTTGTCTGCTTTCTTTTTATCCAC CACATTAATCAGTGTGATTTTCTGGATTATGCCCACTATACAATTTATTTGTTGGTGTATTATTATTGCCCCATAATGTCATATTCTTTTTACTGATAAT GAATTCCATTTAGAATCAATTCTTAATTGATAAAGTCTATCTTATGTTTCAACCCACTAGTCAAAAAACGGTCCATTGAGAATTTTGGTTTATTTCATCA TTCT
• Tissue: pods
• Gene name: LI_gene_185339;
• Additional information: details;

Expression of Ll_transcript_380479

FPKM

• PAB: 1.1
• PNAB: 0
• PS1: 0.1
• PS2: 0.3
• PS3: 0.7
• PW1: 3.6
• PW2: 0
• PW3: 0.9

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_380479

• Blastp: Uncharacterized protein At1g04910 from Arabidopsis with 38.83% of identity
• Blastx: Uncharacterized protein At1g04910 from Arabidopsis with 38.83% of identity
• Eggnog: DUF246 domain-containing protein(ENOG410Z25U)
• Kegg: Link to kegg annotations (AT1G04910)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019464203.1)
• Pfam: GDP-fucose protein O-fucosyltransferase (PF10250.8)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;