| Id Trinity | TRINITY_DN51495_c1_g2_i12 |
|---|---|
| Name Transcript | Ll_transcript_380205 |
| Sequence | AACAAATCATGATATTTGACTTCTTAGTATTCACCATTGACTAAAACACCCAGCCGACTCCAACTACCTCCTACCAAACAAACAACGTAGGCCTATAAAA CCCTGTCTGTTTCTCTCACCCTCTTCAGCCACCTATCACTCTGACATTGCCGCATTTCAAACTTCAATAATGGCAATCTCCTCCGCTAACTCTCTCATTT CCACCAAACTCAACCAATCATCTTCCTCTTCCTTCCTCTCCAGGCCTGGGCCCAAGCCTTATATTCTATCCGTCCACGCCGCCGAGCCCGCCAAAAACTC CCTCGTTTCTGAAAAGCCCATCAAGCCATCGTCCCCCGTTGCCACAAAAAATGTGGCACCGGGAAACTGGGCCGTGGACAGCTGGAAATCTAAGAAGGCG CTCCAGCTGCCCGAATACCCGAGTCAGGAGGACCTTGAATCGGTCCTCCGGACCCTGGATGCGTTCCCTCCAATTGTCTTCGCTGGTGAGGCGAGGACAT TAGAGGAGCGTATTGGAGAGGCTGCTTTGGGAAAAGCGTTTTTGTTGCAAGGTGGAGATTGTGCTGAGAGCTTCAAGGAGTTCAATGCCGTTAATATTCG TGATACCTTCAGAGTCATTCTCCAGATGGGTGTTGTCTTAATGTTCGGTGGCCAAATGCCTGTTGTCAAGGTGGGCAGAATGGCCGGTCAGTTTGCGAAG CCGAGATCCGATGGGTTTGAGGAGAAGAACGGGGTGAAGCTGCCGAGTTACAGAGGAGATAACATTAATGGAGATGCTTTTGATGAGAAGTCTAGGACTC CTGATCCTCAGAGGATGATTAGAGCTTATTGTCAAGCGGCTGCTACTCTGAACCTGTTGAGGTCTTTTGCCACAGGAGGGTATGCAGCTATGCATAGGGT TATTGATTGGAATTTGGACTTCACTGACCACAGTGAGCAGGGAGACAGGTACCAAGAGCTTGCTCACCGAGTTGACGAGGCCCTTGGTTTTATGGATGCT GTTGGACTCAAGGTGGACCACCCCATAATGAAAACAACTGAATTTTGGACTTCTCATGAATGCTTATTATTGCCATATGAGCAATCACTCACTAGGTTGG ATTCAACATCCGGACGCTACTATGACTGCTCTGCCCATATGATTTGGGTTGGTGAACGGACCAGGCAGCTGGATGGTGCACATGTTGAGTTTCTAAGAGG AGTGGCTAATCCCCTAGGAATTAAGGTAAGTGATAAGATGGATCCAAATGAGCTTGTTAAACTCATTGAGATTTTAAATCCCCAAAACAAAGCAGGGAGA ATAACTATAATTACAAGGATGGGAGCTGAAAAGATGAGAGTTAAGCTTCCAAATCTAATCAGGGCAGTGCGTGGAGCAGGGCAAATTGTCACATGGGTCA GTGATCCTATGCATGGAAACACCATCAAGGCTCCATGTGGTCTCAAAACACGCCCCTTCGATGCCATCATGGTATGTAATTTTTTCAACTCTCCCGCACA TGATTTGCCGATCCCACCTAGTGGGAATAAGGCTCGGTCGTTGTTGTTGTCGTCTCTTCTGATTGTTTATAAATGTTTGCCACATAGTTTTAAATATGTA CATGTTTGGATTAAAATCAGCCTTTAGTTATTGTCCTCTTCCTTCATAGAAAATAAAATGAATTTAATTCTGCTGCTAGTCATAAACTAAAAATCTTAGG AGGAAGAACGTGCCTTTCTCAAACTTATATTCTCAATGGCTTTTGAATTGGTCTTTGATGGTAGGCTATATTATATTTAGAATCCCTGGAGTGGTAGGTG GAAAAGGGGTTGGTTGTAGAAGTAGGTGAATTTGTGAAGTATTCAAATCATGAAATCATTGTTTGGCTCTTTGGTTAGTAAGAAATGTCATTGTTGGATC TGGTTGCATTTCTTTATCAGTTGGTGGGATTGGACACGTTTTGGGCCCACATGCTTGTGCATCTTTATTCGTGCCAACTTTAAGAAAGAAACATATAAAT AATATCATACAACTTTTTTCTTTCATTGGTAATTAGAACTTTGTAAGTTTATTGGGATAAAACGTTTCCCACGAGTTACAATTATTGATGCCAACCACTT TTGTTCACTGAATTGAACAGGCTGAGGTGAGAGCATTCTTCGATGTGCATGAAC BLAST |
| Tissue | pods |
| Gene name | LI_gene_185346; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_380205
| Blastp | Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic from Lycopersicon with 75.69% of identity |
|---|---|
| Blastx | Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic from Lycopersicon with 81.04% of identity |
| Eggnog | phospho-2-dehydro-3-deoxyheptonate aldolase(COG3200) |
| Kegg | Link to kegg annotations (544153) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019433967.1) |
| Pfam | Class-II DAHP synthetase family (PF01474.15) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |