Ll_transcript_299314

• Id Trinity: TRINITY_DN51523_c0_g1_i11
• Name Transcript: Ll_transcript_299314
• Sequence: ATTAGATACCTATAGTTGGTTTATATTAATCAAATTTTAGATGAATCTAATGATTTGAATTAGTAGTAAATTTAAATCACTGAACAACTGCATTAAAACA AGTCTTCTTCCACTATAAAAATCATATTGGCGTAAAGTGAATCCAGCTATTTTCAATCCTTTTTCAACTCTGATATCCCATTCAGATTCTGTTTAAATTC TTCTTTTTTCCCCTCCCAATCCAATTAATAACAACAGTAATTGTGCTGAAGAAGCCATGAATGCTTACGCTGCTCAAACATCGTTACAATTTTCAACTTT CCTCCTCCAACAAGACAAGGTTGGAACAAGACCTTGTAGTTCTGTGATTCTGTCTCATGATCCGAAGAACCTTCGAGTTATTGTTTCGGTGAAGTTGCAG AAGCAGCATCATGCAAGAGCTTTAAAGATTCGCCGTAGAACAATAACTCCTTTGGAAGTTTCTTGTTCTCATGACAATATTCCAGCTTCAACATTGAAAT CTGGAAGCTGTCGTACTCCTCTTGATGAAGAATTGATTCTGAAGAATAAATCACAAGAGGTCAAGCCATATTTAAATGGACGCTGTATATATCTTGTTGG AATGATGGGCTCTGGGAAGACAACTGTGGGGAAGGTTATGTCGCAAGTCCTTGGTTATTCTTTTTGTGATTGGTTAGTATGGTAACTTATTGTCTTCTTT TCTGTAAAGAAAAAGTTGAGCTGTCAAGCAAGTAAATCATGCATCATTGAATACCCAGTAGACTAGTAGTTTAGAGAGAGATAGAGATCTTTGGCTATCA AGCTACTCCAAATGTGATCTGATGTATTTCAAGAGATGTTTATGTTCAATTGATATTAGAGGAATCCATGAGATGCAACAAAGATATTTTTGTATGATTG CATCCTATAGTTGAAAAGAGGGTAGGTCTCAGTTAAGGTTAGTGTACAAGATTTCTAGTTGAGATCATTTTATAACAAGGTTCATGTATTTGTCTTTTAC AATACAAATACCCACTTCATGGCCACATTAGAGTTTTGCTGAATATTCTTCTACATGTTCTGAACTTATGTGTTCTTCAGTGACTCATTGATAGAGGAAG AGGTTGGTGGAAACTCTGTAGCTGATATATTCAAGCACCATGGAGAGGCTTTTTTTCGTGATAAGGAGGTCAGTTGGAAAGCACTATGTTTTCATTTTAC GCTTTGCTGTTAACTTGTTTTGAACTTTTAGATTTCCCTGTAACTTTAATTACATCCAGTCTCCACATTCATCTATCTTTATATCATAGTCTGTCCAAAG GAGATGCAGGACCAATATGTTCTGAAATACTGATTAATGATGGTATAGTAGGTCATGGGCTCCAAATTAAAATGCTTTCTAGTAGTTTGTGTTGCTGCTG ATCACTTCTTCTATTTAAGTCAATGGAATGCTTGCCTTACAGTTTAGGCTCTTTTGTAAAAATATTTGAATAAATTATTACTCCAAGCAGTTTGGACTGC TGCAAATAAACTTCTGGGTTTGGTTTGTGGAGAAAACAAATACAGTCAGTAACTGAGGAAAGAGCATGAATCGTATTTATAGTTGAGTCTCTCCCTGCTT AACAGCATGGCTTTTAGGAGTGGGTTTTTCTGTAGATTAAGTGGTATCGGAGAGCCTTATTTGTCTTCCCTTTGGTGTTGGTTTTAAGTCTCATATTGGC TGGGTGTGAGACACGGGGTTCCCGTTTATAGTGGAGACTTGAACCTGTTAACAGACAGCCTTTTCTTAGGTCTGATTCTCATGTACAATGCCCACTATGT TTGAATAACTTCTGAATAAAATCGTCAAGTTTCGTTGCTCTACCTTCTCCCACAAGCGAATCCTTCTCTCAGAAGTTGTAGAGGGAAGCTACTGATTGTG AAAATACAGGGAAGCTACTGATTGTGAAGATACAAGCCACTGAATATGATCACAAGAGGCATTTATGCAGCAAGAAATTAATTGTCAATGTCATTTTGGT GGCCAGCAGTACTGAAATTGTTGCTTGGGACTGATGGTCAGAGGCCACTGGCTATGCGACAGTCTCCCTCATGGAAGTGGAGTTACAGCCTAATCCTAGC CCTGATAGCAGAAATGTGCTTATTCTTTCCGGTTCTACTGTGAGATTGGTCTCAAACAACATGCTGGATTATTTGATGCAATGGTTTTTTTGTTACAAAA CTAGGCTAGGTTTAATGGTTGGTTCATCTGTAAAATAATTCATTATAACTTAGGCTCTGGAATTTGATGCCAATAAAAGTAGATGACTTAATATCTAATG GTGATGGTAAAAGCTAACAAGCCACTACAACATCTCCCCAATACTATTCTTCTATTATACTATAAATTGTTTTCTTTCATAGTTATGTTAACACATTCAC CATTCCTTTTCCTTGCTTGTTGTACTGTTTTAGACTGAGGCATTGAACAAGCTGTCCCTGATGCATAGACTTGTTATTCCTACCGGTGGAGGTGCTGTTA TGAGGCCCATCAATTGGTATTATAATCAACATGCTAATTAGAAATGTCTGGCCTTCTCTTTTTATGATTAATACACATGTCCTTGTACCTGGGTTGCTAG GAAATATATGCAAAAGGGGGTTAGTGTTTGGTTAGATGTACCGGTGGAAGCTCTGGCACAGAGAATTGCAGCCGTAGGAACAAATTCTCGCCCCCTTCTA CATTATGAAGCAGGAGATGCTTACACACAGGCTTTCAAGCGTTTGTCTGCTCTTTTTGAAGAGAGGAGTGAAGCATATGCCAATGCCAATACCAGGGTCT CATTAGAAAACATAGCAGCAAAACTGGGTCAAATAGATGTTTCTAATTTGTCTCCAACCGCAATTGCAATTGAGGCACTAGAACAAATTGAAGGCTTTGT GAAGGGTGAAGATGGCTGTTACACAGGATCCTAGTACAAACTTTACTGCAAGCATGTTTTGATTGTTTTTATTTTTCACAGGTTGCAATTTGCAATTAAG GTCTTGATATTGTGCAGTCTCAAACAAAAGTAATGAATCTTGACACATGTTTATAAATAAATTGTGTTATAGCAATTTTGCATAATCTCAAAACTAATAG ACCTGTTAGTCAATAGTTAATAGCCACATCAAACATTTTTTTAACACTGTTAATATGCATTGTATGCCTATAAACCTTGCAAAGTGGAAGTAGACAGCGA CCCCAATAGTCTTACATATATGTTTGTGGGCCATACCCAGTCAGACAAAAATAAATGTTACCCTGTATGAAAAGTCCTATATGGCTCCAACTAGGGAACA TTCACCTGTCA
• Tissue: pods
• Gene name: LI_gene_185554;
• Additional information: details;

Expression of Ll_transcript_299314

FPKM

• PAB: 1.1
• PNAB: 2.4
• PS1: 1
• PS2: 0.4
• PS3: 0.6
• PW1: 0.7
• PW2: 0.7
• PW3: 0.5

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_299314

• Blastp: Shikimate kinase, chloroplastic from Lycopersicon with 45.58% of identity
• Blastx: Shikimate kinase 1, chloroplastic from Arabidopsis with 56.88% of identity
• Eggnog: Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate (By similarity)(COG0703)
• Kegg: Link to kegg annotations (544078)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019463560.1)
• Pfam: Shikimate kinase (PF01202.21)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;