Ll_transcript_299319

• Id Trinity: TRINITY_DN51523_c0_g1_i16
• Name Transcript: Ll_transcript_299319
• Sequence: AAATGAACTCCTTCTATTAAAAAAAACAAGAAAAAACAACCCATGCACTAATAAGTAACAACAAAGGGTCAAATCCCCAGAATTCGAAATTATTCTGGAT TCAGATTCAGATACTGTCTCCTTTCAATCCAGAAATTAAGCTGAATAAGCTATGGATGCTGTAGCTTCTCAAACATGCTTCCAATTTCAACCAAACAATC TTTTCATTGGAACAAGACCTTCTACTTCTCTAACTCTCTCTCCAGATTCGAAGAATCTTCGAGTTATTGTTTCTTTCAAGTTGAACCAACATCACCATGC AAGAGCTTCAAAGATTTGTCGCAGAACAATAACCCCTTTGGAACTATCTTCTTCTTATCACAATCTTCCAGCTTCAACATTGGAATCTGGAAGCTGTCGT GCTCCTCTTGACGAAGATTTGGTTCTGAAGAATAAATCACAAGACGTCGGGCCACATTTAAGTGGACGCTGTATATATCTTGTTGGAATGATGGGCTCTG GGAAGACAACTGTAGGGAAGGTTTTGTCACAAGTGCTTGGATATTCTTTTTGTGATTGTGACTCATTGATAGAGGAAGAGGTTGGTGGAAACTCTGTAGC TGATATATTCAAGCACCATGGAGAGGTTTTCTTTCGTGATAAGGAGACTGAGGCATTGCAAAAGCTGTCCCTGATGCATAGACTTGTTATTTCTACTGGT GGAGGTGCTGTTACGAGGCCCATCAATTGGAAATATATGCACAAAGGGGTTAGTGTTTGGTTAGATGTACCGGTGGAAGCCTTGGCACAGAGAATTGCAG CTGTAGGAACAAATTCTCGCCCCCTTCTACATAATGAAGCAGGAGATGCTTACACACCGACTTTCATGCGATGGTCTGCTCTTGTTGAAGAGAGGAATGA AGCATATGCCAACGCCAATACCAGGGTTTCATTAGAAAGTATGTCTAAAA
• Tissue: pods
• Gene name: LI_gene_185554;
• Additional information: details;

Expression of Ll_transcript_299319

FPKM

• PAB: 13.2
• PNAB: 7.6
• PS1: 4.4
• PS2: 4.9
• PS3: 6.9
• PW1: 8.8
• PW2: 7.1
• PW3: 7.8

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_299319

• Blastp: Shikimate kinase 1, chloroplastic from Arabidopsis with 63.64% of identity
• Blastx: Shikimate kinase 1, chloroplastic from Arabidopsis with 63.64% of identity
• Eggnog: Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate (By similarity)(COG0703)
• Kegg: Link to kegg annotations (AT2G21940)
• CantataDB: Link to cantataDB annotations (CNT0002940)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019462478.1)
• Pfam: AAA domain (PF13238.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;