Ll_transcript_299322

• Id Trinity: TRINITY_DN51523_c0_g1_i19
• Name Transcript: Ll_transcript_299322
• Sequence: AATTTTTTAAAATAAACATCACAAGCACTGTCACAGTGCAGAAGAAAAGGAAAACTAAAAAAGTGAAAACAATTCCAGTACAAAATCCTCTCTCAGATTC TCTTTATATTCTTCTCTTTCAACTGCCTCCATTTTTTGGTCTAAACCTTTGTCCTCTCAATCCAACCAATAACAAACAGAATTTAAGGCGAACAAGCCAT GGATGCTAGAACTTTTCAAACATCGTTACAATTTTCAACTTCGCTCTTCCAAACCGATAAGGTTCGAAGAAGACCTTGTAGTTATGTCTTTCTCTCTCGG GATCGAAACAAGGTTCAGGTTACTGTTTCAACCAAGTTTCAGCATCATCATGCAACGGCTTCAAAGATTCGCCGCAGAACAATAACCGCTTTGGAGGTTT CTTGTTCTTATGATAATCTTCCAGCTTCAACATTGGAATCTGGAAGCTGTCATGCTCCTCTTGACGAAGAGTTGATTCTGAAGAATAAATCAGAAGAGAT CGCGCCATATTTGAATGGACGCTGTATATATCTTGTTGGAATGATGGGCTCAGGGAAGACAACTGTGGGAAAGGTTCTGTCACAAGTGCTTGGCTATTCT TTTAGTGATTGTGACTCATTGATAGAGGAAGAGGTTGGTGGAACCACTGTAGCTGATATATTCAAGCATCATGGAGAGTCTTTCTTTCGTGATAAGGAGG TCAGTCAGAGAGTACTATCTTTTCACTTTATGTATTCCTGTTAAGTTGTTCTGAACTTTTAGATTTCCCTGTCTCTTTAATCATGCCCAGTCTCCTTATT TTCATCCATCTTTATATTATAATCTGCGCAAAGGAAATGCAGGACCAATGTGTTCTGAAATACTGATTGATGATGGTATCGTAGTAGTTTTAACTTTTAT AGGCATGAGAGTATAGAATTTGCTGAATCAACTTGGTATAAAATAAAAATGTTTTCAAGTAGTTTGCATTGCTGACAGATCACTTCTTTTAATTAAGTCA ATGGAATGCCTGTCTTACATTTTAGGCTCTTTTGTAAAAAGTATATGATAATATATTTACTCCAAGCAGCTCGGACTACTGCAAATAAATCTTCTATTGG TTGAGTCTAAGAACAAATTGCCCATGTATAGTGGAGGATCTCCCTTCTTAAAAGCATAGCTTTTAGGAGTGGATTTTCCTCTAGATTAAGTGGTATCAGA GAGCCTGGTTTGTCTTTCCTTTGGTGTTGGGCTTAAGTCACATATTAGCTGGGTGTGAGACACAGGGTTCCCATTTATAGTGGAGGCTTGAAGCTGTTAT CAGCCTGCCTTTTCTTACATCTGGTTCTCAAGTACATTACCCACTGTGTTTGAATTAAATTTTTAATAAAATCATCAAGGGTTTCTTACGTCTGGTTATC AAGTACATTACCCACTGTGTTTGAATTAATTTTTTACTAATACCATCAAGGTTCGAAGCTTTACCTTCTCCTAAAAACAAATAATTCTCTCAGAAGGTGT AGAGGGCAGGTACTGATTGTAAACCTGTATGTCAATGAACATGGTCACAAGAGCCCTTTTATGCAGCAAGAAATTAATTGTCAATGTCACTTAGTGGCCA GCAGTACTGTAATTGTTGCTTGGTACTTATGTTTAGAGGCCACTGGCAATGCCACAAGGCCCCACATGGAAGTGGAGTTATAACCTAATCCTAGCCCTGA TAACAAACATATACTTATTCTTTTGAGTTCTACAGTGAGATTGGTCTCGAAGACTCAGACAATACGCTTGGTTATTTTGTGCAATGGTTTGTTTGTTACA AAACTGTGCTATGTTTAATGTTGGTTCTTTGGTAAAATATCTCATTATAACTTATAGCTCTGAAATTTGATTTCAATAAAAGTAGGCCACTTAATATCTG ATGATAATGGCATAAGCTAACAAGCCAGTAAATCATCTCCCAATTACTATTCTTCTGTTCTACTATAATTTGCTTTCATCGGCTCATCGCTATTTCTTTT AACACATTCACCGTTCCTTTTCCTTGCTTATTGTATTGGTTCAGACTGAGGCATTGCAAAAGCTGTCCCTGATGCATAGACTTGTTATTTCTACTGGTGG AGGTGCTGTTACGAGGCCCATCAATTGGAAATATATGCACAAAGGGGTTAGTGTTTGGTTAGATGTACCGGTGGAAGCCTTGGCACAGAGAATTGCAGCT GTAGGAACAAATTCTCGCCCCCTTCTACATAATGAAGCAGGAGATGCTTACACACCGACTTTCATGCGATGGTCTGCTCTTGTTGAAGAGAGGAATGAAG CATATGCCAACGCCAATACCAGGGTTTCATTAGAAAGTATGTCTAAAA
• Tissue: pods
• Gene name: LI_gene_185554;
• Additional information: details;

Expression of Ll_transcript_299322

FPKM

• PAB: 0.7
• PNAB: 0
• PS1: 0.1
• PS2: 0.2
• PS3: 0.2
• PW1: 0.1
• PW2: 0.4
• PW3: 0.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_299322

• Blastp: Shikimate kinase, chloroplastic from Lycopersicon with 52.94% of identity
• Blastx: Shikimate kinase, chloroplastic from Lycopersicon with 52.94% of identity
• Eggnog: Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate (By similarity)(COG0703)
• Kegg: Link to kegg annotations (544078)
• CantataDB: Link to cantataDB annotations (CNT0002940)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019459286.1)
• Pfam: Shikimate kinase (PF01202.21)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;