Ll_transcript_299305

• Id Trinity: TRINITY_DN51523_c0_g1_i2
• Name Transcript: Ll_transcript_299305
• Sequence: TTTTTTTTTGTTTTTACTAGCGACGGATAATTGCCAAGTTTTCTGATTCCTCTACATTGTTTTCCAAATAAGGATGTATTTTAAGATTTTCTTTATGACA AATTGATTGAAAAACTTGGGCACAGATGATAGTCTCACTAGATGGATCCTCTGGAGTAATTTCTATCAAGGTGAACCAGAGGTTCTTTATTGCCCAAATT TGAGCAAGTTTAAAATACATTTCCTTCTACTTGTTAGTTGGGAAAAACTACTTCCTTGCCATTCCTATTTATCTTTTCCATTACGTGAAAACACAAATTA AGAAATGCAGTAAATATGCTGATCTTCATTAAATTTATTGTGTTTTCCTTCTTCTAATATGCCTTTTATGGCGTTAACTTATTTCCACTACTTATGTAAA TGAAGAGAGTATTAATTAAGGGTAAATTTAGAAACTAGTGATTAATACTCTGTTGAATTTCTGAATGAGGCACATAATTAAGAACAAAATTCTTCAAATG AGACAAATAAATAGGAAGCAAAAGAGTAACTTTTCACTTATTTTAAGGAAAAGCATGGTGTTTAACAAGAGTTTTTATGTAAATATGCCTGCATTGGATT CTATTTTGTAACTGACTGAAATAAGCCTGATGCCCATCTTGAATCTTTACATTTTATTTCAAATGTTACTTTTGTAGCTTCAACATTGAAATCTGGAAGC TGTCGTACTCCTCTTGATGAAGAATTGATTCTGAAGGTGAAAGCATGATGCTCTGTGTCAGTTTTAATTAACTTAAGCCAATTTAGCTCAGTGATGTTAA ATCATTCTATTAGTAACCAAAACATCAGAAAATGGTAATCATAACTGGGTTTGTAACTTGTCTAAGCAGCTAAATGTCATTATCTTACTTGATTCAATAA AATTGCAGAATAAATCACAAGAGGTCAAGCCATATTTAAATGGACGCTGTATATATCTTGTTGGTCAGTTTCTTGGTTTAAAGTCTTTGTGATTACATGG TGTATGCTGAAAGCATAAATTATGTTGGCTTTGGCATTCAAGAGTACTTCAAATTTGACATGCAGGAATGATGGGCTCTGGGAAGACAACTGTGGGGAAG GTTATGTCGCAAGTCCTTGGTTATTCTTTTTGTGATTGGTTAGTATGGTAGTTTATTTTCTTCTTTTCTTTAAAGAAAAAATTGAGCCTTCAAGCAAGTA AATCATGCATCATTTGAATATCCATTAGAGTAGTAGAATATAGAAAGAGTGAACCTTGGCTATAAAGCCACTTAATAATTTACGTGTGGTCCGATTTACT TCAACGAAATTGATATTAGAGGAATCTACCGAGATGGAACAAAGGCATATTTGTTTGATTGTATCCTATAGAAGAAAATAAGGAAGGTCTCAATTAAGGC TAGTGTACAAGATTTCTGGTTGAGATCATTTTATAACAGAGTACATGTATTTGTCTTTTACAATAAAAATGTTCTATTTCATGTTACATTTGTGTTTCTG CTGAATATTCTTCTGTATGTTTTGAACTTATGGGTGCTTTAGTGACTCATTGATAGAGGAAGAGGTTGGTGGAAACTCTGTAGCTGATATATTCAAGCAC CATGGAGAGGTTTTCTTTCGTGATAAGGAGACTGAGGCATTGCAAAAGCTGTCCCTGATGCATAGACTTGTTATTTCTACTGGTGGAGGTGCTGTTACGA GGCCCATCAATTGGAAATATATGCACAAAGGGGTTAGTGTTTGGTTAGATGTACCGGTGGAAGCCTTGGCACAGAGAATTGCAGCTGTAGGAACAAATTC TCGCCCCCTTCTACATAATGAAGCAGGAGATGCTTACACACAG
• Tissue: pods
• Gene name: LI_gene_185554;
• Additional information: -

Expression of Ll_transcript_299305

FPKM

• PAB: 0.3
• PNAB: 0.5
• PS1: 0.2
• PS2: 0.1
• PS3: 0.2
• PW1: 0.1
• PW2: 0.2
• PW3: 0.6

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_299305

• Blastp: -
• Blastx: Shikimate kinase 1, chloroplastic from Arabidopsis with 72.73% of identity
• Eggnog: Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate (By similarity)(COG0703)
• Kegg: Link to kegg annotations (AT2G21940)
• CantataDB: Link to cantataDB annotations (CNT0002940)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019462478.1)
• Pfam: -
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;