| Id Trinity | TRINITY_DN51523_c0_g1_i20 |
|---|---|
| Name Transcript | Ll_transcript_299323 |
| Sequence | AATTTTTTAAAATAAACATCACAAGCACTGTCACAGTGCAGAAGAAAAGGAAAACTAAAAAAGTGAAAACAATTCCAGTACAAAATCCTCTCTCAGATTC TCTTTATATTCTTCTCTTTCAACTGCCTCCATTTTTTGGTCTAAACCTTTGTCCTCTCAATCCAACCAATAACAAACAGAATTTAAGGCGAACAAGCCAT GGATGCTAGAACTTTTCAAACATCGTTACAATTTTCAACTTCGCTCTTCCAAACCGATAAGGTTCGAAGAAGACCTTGTAGTTATGTCTTTCTCTCTCGG GATCGAAACAAGGTTCAGGTTACTGTTTCAACCAAGTTTCAGCATCATCATGCAACGGCTTCAAAGATTCGCCGCAGAACAATAACCGCTTTGGAGGTTT CTTGTTCTTATGATAATCTTCCAGCTTCAACATTGGAATCTGGAAGCTGTCATGCTCCTCTTGACGAAGAGTTGATTCTGAAGAATAAATCAGAAGAGAT CGCGCCATATTTGAATGGACGCTGTATATATCTTGTTGGAATGATGGGCTCAGGGAAGACAACTGTGGGAAAGGTTCTGTCACAAGTGCTTGGCTATTCT TTTAGTGATTGGTTAGTAAGCTAATTTATCGTCTTCTTTCCTTTAAAGAAAAAAATTGAGCCTTCAAGTAAATAAAGCATGCATCATTTGATTACCTGGT AGACTAGTAGAATAGAGAAAGAGTGATCTTTGGCTATAAAGCTACTCAATGGCTTATGTGTGTGATCTGATATACTTCAACAGTATTCAATTGATATTAG AGGAATCTATGGAGAGATGACAAAGTTATATTTGTATGATTATATCCTATAGATGAAAACAGTGTAAGTCTCAGTTAAGGTTAGTGTACAAGATTTCTGA TTGAGATCATTTTATAACATGGTGCATGTATTTGTCCTTTACAATACAAATACTCTATTCCATGGCCACATAAGAGTTTCTGCTGAATATTCTTCTGTAT GTTCTGAACTTGTGGGTGCTTTAGTGACTCATTGATAGAGGAAGAGGTTGGTGGAACCACTGTAGCTGATATATTCAAGCATCATGGAGAGTCTTTCTTT CGTGATAAGGAGGTCAGTCAGAGAGTACTATCTTTTCACTTTATGTATTCCTGTTAAGTTGTTCTGAACTTTTAGATTTCCCTGTCTCTTTAATCATGCC CAGTCTCCTTATTTTCATCCATCTTTATATTATAATCTGCGCAAAGGAAATGCAGGACCAATGTGTTCTGAAATACTGATTGATGATGGTATCGTAGTAG TTTTAACTTTTATAGGCATGAGAGTATAGAATTTGCTGAATCAACTTGGTATAAAATAAAAATGTTTTCAAGTAGTTTGCATTGCTGACAGATCACTTCT TTTAATTAAGTCAATGGAATGCCTGTCTTACATTTTAGGCTCTTTTGTAAAAAGTATATGATAATATATTTACTCCAAGCAGCTCGGACTACTGCAAATA AATCTTCTATTGGTTGAGTCTAAGAACAAATTGCCCATGTATAGTGGAGGATCTCCCTTCTTAAAAGCATAGCTTTTAGGAGTGGATTTTCCTCTAGATT AAGTGGTATCAGAGAGCCTGGTTTGTCTTTCCTTTGGTGTTGGGCTTAAGTCACATATTAGCTGGGTGTGAGACACAGGGTTCCCATTTATAGTGGAGGC TTGAAGCTGTTATCAGCCTGCCTTTTCTTACATCTGGTTCTCAAGTACATTACCCACTGTGTTTGAATTAAATTTTTAATAAAATCATCAAGGGTTTCTT ACGTCTGGTTATCAAGTACATTACCCACTGTGTTTGAATTAATTTTTTACTAATACCATCAAGGTTCGAAGCTTTACCTTCTCCTAAAAACAAATAATTC TCTCAGAAGGTGTAGAGGGCAGGTACTGATTGTAAACCTGTATGTCAATGAACATGGTCACAAGAGCCCTTTTATGCAGCAAGAAATTAATTGTCAATGT CACTTAGTGGCCAGCAGTACTGTAATTGTTGCTTGGTACTTATGTTTAGAGGCCACTGGCAATGCCACAAGGCCCCACATGGAAGTGGAGTTATAACCTA ATCCTAGCCCTGATAACAAACATATACTTATTCTTTTGAGTTCTACAGTGAGATTGGTCTCGAAGACTCAGACAATACGCTTGGTTATTTTGTGCAATGG TTTGTTTGTTACAAAACTGTGCTATGTTTAATGTTGGTTCTTTGGTAAAATATCTCATTATAACTTATAGCTCTGAAATTTGATTTCAATAAAAGTAGGC CACTTAATATCTGATGATAATGGCATAAGCTAACAAGCCAGTAAATCATCTCCCAATTACTATTCTTCTGTTCTACTATAATTTGCTTTCATCGGCTCAT CGCTATTTCTTTTAACACATTCACCGTTCCTTTTCCTTGCTTATTGTATTGGTTCAGACTGAGGCATTGCAAAAGCTGTCCCTGATGCATAGACTTGTTA TTTCTACTGGTGGAGGTGCTGTTGTGAGGCCCATCAATTGGTATAATAATTAACATACTACTGAGCAATGTCTTCCCTTCCCCTTTTATGATTAACGTAA AGTTCCTTCTACGTGGATTGCTAGGAAATATATGCACAAGGGCGTTAGTGTTTGGTTAGATGTACCAGTGGAAGCCTTGGCACAGCGAATTGCAGCGGTA GGAACCAATTCTCGTCCCCTTCTACATTATGAAGCAGGAGATGCTTACACGCGGACTTTAATGCGTTTGTCTGCTCTTTTTGAAGAGAGGAGTGAAGCAT ATGCCAATGCCAATACCAAGGTTTCATTAGAAAACATAGCAGCAAAACTGGGTCAAAAAGATGTTTCCAATTTGTCTCCAACTGCCATTGCAATTGAGGC ACTAGAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_185554; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_299323
| Blastp | Shikimate kinase, chloroplastic from Lycopersicon with 49.29% of identity |
|---|---|
| Blastx | Shikimate kinase 1, chloroplastic from Arabidopsis with 57.62% of identity |
| Eggnog | Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate (By similarity)(COG0703) |
| Kegg | Link to kegg annotations (544078) |
| CantataDB | Link to cantataDB annotations (CNT0002940) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019459286.1) |
| Pfam | Shikimate kinase (PF01202.21) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |