Ll_transcript_300635

• Id Trinity: TRINITY_DN51541_c1_g1_i4
• Name Transcript: Ll_transcript_300635
• Sequence: CTCATAATGTGATATATAATAACGTTTGATATTCCAGCCACACTCATGTTTAATTGAGACAAATATATCAGATAGCAGATAGAGAAGTGAGAAGTGAGAA GTGAGAAGTGAGAAGTGAGAAGTGAGAAGTGAGAAGTGAGCGTGAAAATGTTGCAACCGCACTCCTGTTCTGCTACAACAAAATCTTCCATTACTATCCC AAACGACGCTTTCACTCCAAAGTTCATTCCTTTAAGGCGTTATTCTTCTTCTTCTTGTATACCCACTTTTTCGTTTACCCTCCAACCACTCTCTATCACA TGCCGCCACTCTAACCTCTATGAACCTAAATCATTTCCCTCTTCTCCACAAGCTCAACGCTATTCAGCACAACCAGCTTCAGTTGGAACTTTACCACCTA GGGTTTTTGTGGGGCACTCAATTTACAAAGGGAAGGCTGCACTCACTGTCTCTCCTAAATCTCCGGAATTTCAATCATTGGAATCCGGGGCATTCAAAGT ATCTAAGGAAGGTTCTGTGCTACTTCAGTTTGCTCCTGCAGTTGGTTTGCGTCAATATGATTGGAACAGAAAACAGGTGTTCTCGCTATCAGTGAGTGAA TTGGGAACTCTAATTAGCCTTGGTGCAAGGGAGTCTTTTGAATTTTTTCATGATCCAAATCAGGGAAGAAGTGATGAAGGTAAAATTAGAAAAGTTTTGA AGGTGGAGCCACTCATGGATGGTTCTGGTCACTTATTTAACCTCAATGTTCAGAACAAGCTTGACAACATCGACGAAAATATCTTCATTCCTATTACAAA GGCAGAGTTGGCGGTTCTCAGCTCACTTTTCAATTTTATCATGCCATACCTTCTAGGTTGGCATACTTTTGGAAACTCTATAAAGCCAGATAATTCCAGC AAAGTGAATAGTGACAATCCAAGATATGGAGGAGACTATGAATGGAACAGATAGGGATCACTTCTACCACCCCTCTTGAAGCTTCTCAACTTTCAAATAT GTGAAGTTATTGTATTCTGTTAGTGTTAGCTGATAGCTGTTTGAGAAATTTTGAGATAGCAGTATAATGTAGAACAGTTATTTTTAACTATTTACTCATT TCTTTTCATGAACTTTTTTACTCTTTTTATTTTTATTTTTAGACCATGTCCAATTCCAGGAAACAACCTTTAAGGCTACGTATATTTATCATCCCCATAC CTGGATACTCACTGAGTGAGAGTCTCGTGCG
• Tissue: pods
• Gene name: LI_gene_185738;
• Additional information: details;

Expression of Ll_transcript_300635

FPKM

• PAB: 6.7
• PNAB: 22.7
• PS1: 14.6
• PS2: 12.4
• PS3: 12
• PW1: 13.6
• PW2: 11.2
• PW3: 13.7

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_300635

• Blastp: Single-stranded DNA-binding protein WHY1, chloroplastic from Arabidopsis with 64% of identity
• Blastx: Single-stranded DNA-binding protein WHY1, chloroplastic from Arabidopsis with 64% of identity
• Eggnog: Single-stranded DNA-binding protein that functions in both chloroplasts and nucleus. In chloroplasts, maintains plastid genome stability by preventing break-induced and short homology- dependent illegitimate recombinations. In(ENOG41124UZ)
• Kegg: Link to kegg annotations (AT1G14410)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019454671.1)
• Pfam: Whirly transcription factor (PF08536.10)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;