Id Trinity | TRINITY_DN51545_c2_g1_i14 |
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Name Transcript | Ll_transcript_300700 |
Sequence | GGGAACCTGTCCCACCAAGAAGCTATCATGACTAGAAGGTTGATTTGAGGTTTCTTTTTGTCATCTTTGTAATAAACCCTCAATCAATTTCATTCTCTCA AATGTGTCAATACCATAATTAACACAAAATCTCTCAAAGTATTACTTCTATATCATGATAAAGATATCACTTTGAGGTTAAGCCATTCTTCTCTCACACA CTGAACTAGTAAAATCTCGCTTTCATTTCTTCAACAACCGACAAACATCAGAGCCAGACATTTCTTCATTTATTCCACAATATTCATTCAATCTCCTAAC TAGGTCTGCTCATATGGTTTGATCTAATCTCAGGAACAAGTTACCTAAATCTCCTATGTGGTTTTCATTTCATCACATGGAATCTATGTTTCATGACAAC ATTTTTAGATGTTTTCAATGGTTTTGAAAACTTTGATACTTCAGGGTTTAGTGTATAGCTTGGTTACTATATACTGAAATAATGAGTTGGGGTCGTAAAG GCTCTCCCAGAATGTCTTCTTTTTCTTCTCATCGAAGGCCTCTTTCTTGGATTTTAGTTTCAGTTGGAGGGCTAGCAGTTTTCTTAATTTATGCTTCATT TGTTCTTTTGTCATCTTCAATTGGTGCCACAGTTCAGGATTTGTTTTATGTTGTAGGTAGTTCAGGAAAGATACACGGGTCAGTAGCGTCTTCTATAAAT AAAGATACTACCGATGCTAACATGAATAAGAGTTTTGATCTAGTTAATGATAAAACATCCTTAGATCCACAATCTCGCACTGTTTCCTCGGGCGTGTCTA GTGACAGTAGCATTGAACAAACTGACACTAAATCAAGCTCACAAGTAGAGTTGGGTGGGTCTAGTTCTGTGAATTCTCAAATAACCAAGGAGGGGAGTGG TATAGAAACTTCTGATGCAGCAGCTTCTAATGCACAAGAATCTGTGACTTCACTTAGCAATGGTGCACATTCAGCAAATAGTAGCTTGCCTGCTAAACCC CATCCACAAATTGATTTGCCTCTGGCTGCTGCCAATTCTTCCAGGGCAGAACCTACAACATCTAATGAGGCCTCTACGTCTTTTTCTGATTCCAATTCAA CAGCAAATATCACATCGTCTGCTGGTGCGGTTAATTCAGATTGCAGTTATCTTTTTGCCTAGCAAAAGCTTGTTATCAGTTTATCATTTTATTTAACTCT CTTGTTTTACCTAATTATAAGTTATAACACTAATTTGTTTGTTTTTCATTGGTTTATTTCTTTTGGAAACATACTGAAGTGCAGTATCATAATTAGCTTC ATTTTATTAATTTTAACTCGTTAACTTTGTCCTGTAAGTTTTGTAACTTGGTAATTGCTATGATGATCTGGTTTGTACAACACCCGGTTGTTATCTGTCC AATTAACTTTTAACAAGAAAATTGGGTAGAGAATGCTTCCGTCTTTATTCATTGGCCATATATACACCTACCCCCACACATTAGAAGTTGTTCCATTATG GGATATAGACTTTGTTTGGTATTGGATACTGAATTATTTATGAGCAGTGGACCCGCTGAGCATTTGTATTAAGTGCCAAAGCAATGTTGGGACCTGCATT TTGGTGGTTTCAAATTTTCAACGCTGTCTTTACTATTGTGGTTGCCATCACCAATTTTCCGTGAATTTTAATATATATATACACACACACACACACATAT ATATATAGAGAGAGATTATTTACTTTTTGGTCAGAATTTTTTTTTTGCTGTGGCCAATGATATAACAATAGTGGTGCTGCTATCCATATACTTCTGTGAG TACTGGGGTGAGAGCTTCAAATGAGATTCCTTGCTTCCACCAGTTTAGCTTGATTTTTAATTTGAGAGTTTTACTGAGTATGAATGCTTAATTTCTGTTA AGTAGCATGCTCTGTTTTACTTTGGTCTCAGTTCAAATTCTGAATTAGGTTAGTTAAGAGATTTGCAAAAATTATTAGATTTACTCTGGCTTGGGATAGG GAGCATATAACTACACACATTGTGACATTGCCATGTAGCCCGCTAAAGGTTGTCTAAATCATACTTACCGCGGAGCCAACTCCTTATGAAATTGCCATGG TGGTGTATGATTGGTTATGCTGTTATTTATCAGATGCAATAGTTGGAGCCAGTCTCACTTGGGCAAGCCCATGGATATTTATTGACTCACCATTCATTTA TATCATATTTTACCTATTTGTTGTTCCCAGGTTCAGTTTCGGGGGCAATTTTCATGTCAGTCCTTATGTTTGACCCTCTGTCACAGTTTAGCCTTTCACG ATCTGCATTTAGTTGGTAAATAAGACTGGCACAAATACTTACTGTCAGACACACACTATTGGATTTAAAATCAGTGATCGGACTCGACCATTTTTTAAGT GGGGATGCCATTTATGTTGTCGCTACATATCTTAAATATTCTAAAACATATGTAAAATATTAGTAGATGTATTTGTATTCTTGTTACTAAAAGTTTCTCA TAGTAGACATGTATAACCATTTTTTAATGATGTTATTTAGAATTACTCTTTTTGTCTTCTGAGTCTTTTAATTGGTATTTTCTATTCTGTTTTGTAGACT GTGATCTGTATCATGGAGATTGGATATATGATCAATCGGGACCATTATACACAAACAATTCTTGCCCTATAATAACACAGATGCAGAATTGCCAGGGTAA TGGAAGGCCTGACAAGGATTATGAGAACTTTCGGTGGAAGCCCTCTCAGTGTGACATCCCACGATTTGATCCCAATTTTTTTTTGGAGCGGATGAGAGGG AAGACCTTGGCTTTCATCGGAGATTCAGTGGCTCGAAACCAGATGGAATCAATGCTGTGTATTCTCTGGCAGGTAGAGAAGCCGAAGAATCAGGGAAATC GTAACATGCAACGATATTATTTCAGGTCCACGTCTGTAATGATTATCCGGATATGGTCATCATGGCTTGTCAAACTAACATCTGAACCATTTGATTATGC TCCTGCTGGTGTGGATAAGCTCTTTCTTGATGTCCCCGAGGAGAAGTTAATGGAACACATCCCAAAATTCGATGTGGTTGTTCTTTCTTCTGGTCATTGG TTTGCGAAGCAATCTGTTTATATTCTTAACAATGAGATAGTGGGAGGACAGTTGTGGTGGCCAGACAAGTCTAAGTCAATGAAGATTAACAGTGTTGAAG CATATCGTATATCAGTCGAAACCATTCTCACTGCTCTCGTGACACATCCAAATTACACAGGGATTACAATCGTGCGCTCCTATTCGCCCGATCATTATGA GGGTGGGGCATGGAACACAGGTGGATCATGCACTGGGAAGGTTAAACCTCTCGCGCCCAGTGAATTGGTGGAAAATGTGCACACAAATGACATGCATCAG CAACAGGTTACAGGCTTCAACAGTGCTATAAAAAAGGCAACAAATAAATCAAAGTTGAAGTTAATGGATATCACTGAAGTGTTTCAGTATAGGCATGATG GTCATCCTGGTCCATATAGGAGTCCTGACCCAAATAAGATTACGAAACGTGGCCCCGATGGAAGGCCACCACCACAGGATTGCTTACACTGGTGCATGCC AGGACCTGTAGATACCTGGAATGAACTTGTATTTGAAATCATCAAGAGAGAACTTGACTGAAGAGTTGAATCATGAGAATTATCTAGTTACTTTTTTTTG ACAATGTAGCTGCATGTTATGCTTAATTTGTTAAGAGGGTGATTGTAATGTAAGAAAAGTCCAGTTCTATCTTTAAATTAGAATAATATTTTATAGGATA TACACGGCTACGATTGTATCTTTATAAGAGGTTGAACTTGACGTAACAGAAAGATTATTCCCCACCGTCTCATTCAC BLAST |
Tissue | pods |
Gene name | LI_gene_185776; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_300700
Blastp | Protein trichome birefringence-like 18 from Arabidopsis with 75.15% of identity |
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Blastx | Protein trichome birefringence-like 18 from Arabidopsis with 74.86% of identity |
Eggnog | Pfam:DUF231(ENOG410XREJ) |
Kegg | Link to kegg annotations (AT4G25360) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019439006.1) |
Pfam | PMR5 N terminal Domain (PF14416.5) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |