Id Trinity | TRINITY_DN51562_c3_g1_i2 |
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Name Transcript | Ll_transcript_298718 |
Sequence | TTGCATTTCTACTATTCTTTCTGTATATATACTATTCTAGCATGGTACTACATATTCAGTTCTTTATTGAGGATTTCTTACCCTCTTGCATTTCTACTAT TCTTTCTGGCTATAGCTATGTGTAGTTCCATTCTGTCATTATTGCTTCCAAATGAATGTATCTTGTATTTGTGGCCACCTGAGGTGGGTGAAGATGTTGT AGTTTTGTCGTCAAATTGATGTCCATAGCTAACTACACATGCAAATTTGCAGTGAGTTATTCTTCCTTCTATGGGAAGAAGATAGACCCTGAGCCGGGAA GATGCCGGAGGACTGATGGGAAAAAGTGGAGGTGCTCCAAGGAAGCTTACCCAGACTCCAAGTATTGTGAGCGCCACATGCACCGTGGCCGCAACCGTTC AAGAAAGCCTGTGGAATCACAAACCATGACACAATCACCATCCACTGTGACATCAGTGACTATTGCTGGGAGCAGCAGCGCGACTGGAAACTTCCAGAAC CTTGCTGCAAATGCCTTTGATAATCTGCAAGGTAGTGGTTCGGGAACCGGCCTTACCGACTACCATCTAGATTCCATTCCCTATGGGATTCCAAGTAAAG ATTACAGGTATGAAGAAATCCTTGTTATATTTCACAGCACTCTGTTACTCGGAAATGGAAAAATAATTTGGCTAGAGGGAATAGAACAGAAAGTATTTCA TCAATGTCATATTGCTTGACATATTTAACGGAACTTCCTTTACTAGTTTTTCATGTTCATGTGTCGTGATATAGGCGTATGATTTTCTGACTATGATTAC CATTTGTCTGTAATCTTGATATGCATAGGTCATGGATTTCTGATTTGTTTGTGGATGTTACTGTGTTTTATTGTCTTTTTTAGTATTGGGTGGTTCTCTG ACTTGTGGGCTAGGGATTCAGTAGACCATGAATTGAAATTCTCTGCAAACTAATTCTTGTTCGTTACTTTTAAAAAAGGAGATAGAAATACGGTTCTTTA ATTACCATTCTAGTTTCCTTTTCTTTGCATTAAATCAAAGGGTGTACTGCATTTTATTTCTGTGAAACATAGTCCTTTCTAAATTTACCCACTAAACCTT TCTTTTTATCACTTAACCCCTTGTTTTTTAAGAGAAAAAATTACATTGTTAGTTAAATCAAGACAGAACATAAGGCATGGAATCAGCCTTGGAACAATTA GAGTTGTGGCGTAAAGTTGTAGATCAGCAACCTCTTACAAATGTAAGGTAAGGCTGCCTATTTTAGACCCACACAGTGGGCTGATCCTTACGCGGTTCCC TGCACATAGCGGAAGCTTTATGCCATTTACTATGGAATGTAAGACACAATGCACGCCACACGACCTTCCCATTACAGAACAAAGTTTTTTCACCACTTAA CCTCTATAGAGTTTGGTTTTAAGTGTCTGGACATTAACTTCTGTTTGATTTAAACTGAAAAGCGATGTTTATAGCAAAATGATTTTCAAGGGGTGTAGAA AGGTGCTGGAAAGAGACATATGGGACGGGAAGAAAAAAAGTGAGAAATGTGATGGAATGGAAGAGAGAAAAGCTGATAGGAAGAATGGTAAAAGGTGATG TAAGAGAGAAACCGGTAAAAACAGTAGACTCGTTTCATTTAAAACCAAACTACATGGAACCGTTAAGTGATAAAAAATTAAATGAGTGTTTACAAAGGGT TGCTTCCGGGGGATGAAAATGTACTTTAGAATGCTAATATGCAGCTCTGTGGAGTGTCTGCAATATCTGTCGAACAGGGAAAATTGAGAAAGGTAGGTAC AGTGGGTGAGAATGTCTTACAATTTTGTTTTTGGTAGAAAGAATGTATTTCCTTTATAACTTATGAACAAAATGGTGTGTATCACTTTCTCTTCATAGCT GTATCACAACTTCATTACTTCATTCCTTTTGACATCAAAACTCAAAAGTTATAACATGAAAGATGATTCTATTCTATTGAATATGACGTTACAATTAAAT ATCAAATTAATGATGCTGGTGCTAAAGGGTTCTCCGAAAGAAAAGACATATCTTTGAATTTATGCCCAAGTATTGGCTCTAGCCAAATTTGTTAGGGAGA CTGCAGTCACTGGTTGAACTGAATGATGTGATTACACTCAGACAAGTTTATACTTTTAACGGAACCTCAATTTAGTAATTTCATCTTATAATTTTCATTA GACCACTGTTGCTTCCACAATCTTTGTTGTACAGTAGAGATTAAGCTTTGATTTCATTGAATAATAGCACTTTGGTAACTAGGATAGAGCTGGTAACCCT GTGTAGTCTGCTGCTCTTTACCTTCTTCAATTTGTTCCTGTTGCTTATGTAATAATCACTGCCATGAATCATGATTATTTGTTTGTACTATTCTATTCCA CGTGGTCGATAAGGCAACTTGTTCTATGATAAATTTCAGCATAAAGTTGCAGAATATGTTAGCAGTACTGTTATTTCTCATCCCTTGAACTAAACAGGTA TCTTCAAGGACTTAAATCTGAAGGTAACGAGCACAGCTTCTTTTCTGAAGCTTCCGAAAGCAACAAGGTCCCCCGAATGGAGTCACAGCTAGAAAACACA TGGCCTTTGATGTCAACCAGATTTGCTTCTCATTCTACAATGAAATCAAGTAATAATCCCATGTTGCAGAATGATTATCCACAACATTCATTTTTATCTA GTGAATATGCCTCAGGAGAAGCTGTGAAGCAGGACGGTCACTCTCTTCGACCTTTTTTTAATAAACCGCCTAAAAGCAAGGAGTCATGGTTTTGTCAGGA AGATGAAAGATCCAACCAAACATCTCTCTCCACAACTCAGCTCTCGATATCCATTCCCATGGCATCTCCCGACTTCTCTGCAACGAAGTCTCAATCCCCT GCATGGTGAGATTTTAATTAAGCAAAGTTTCAATTTTTAAACATAAAACCAGCTGAATACTGTAATTATATCATTGCAGATAACTAAAAACAGCCCTTCA GGATTTGCAGTGCCATGTTATGAAAGGAGTGAACAAGTGCACTGGAATATGTCCCATGTTAATGTATTTCATTTTTATCTATAATAATAATGATGCATTT TCTGCAGAGTTGTGTGCAACATTATGGAACCTCATCCTTTTGTTATAAGCAAGACCATATTTACTGATATGATGGGTTATTTGTGGAACCATCAAATATT CTTCCTTTTGTAACCTAATGAATCTATAACAATATTTCATTCCTGAATTATGATAATTGCTTAATAAAGTTGCTAGTCTGTTAATGATTTAAAAA BLAST |
Tissue | pods |
Gene name | LI_gene_185927; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_298718
Blastp | Growth-regulating factor 5 from Oryza sativa with 54.31% of identity |
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Blastx | Growth-regulating factor 5 from Oryza sativa with 54.31% of identity |
Eggnog | growth-regulating factor(ENOG410YFT7) |
Kegg | Link to kegg annotations (4339928) |
CantataDB | - |
Mirbase | osa-MIR396d (MI0013049) |
Ncbi protein | Link to NCBI protein (XP_019454355.1) |
Pfam | WRC (PF08879.9) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |