Id Trinity | TRINITY_DN51562_c3_g1_i6 |
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Name Transcript | Ll_transcript_298723 |
Sequence | ATAAAGGTCCACAATCAACCAAGGAAGAAAACTGGTATACAATCCTTCCATAAAGAAAATGATATATCACAACCAACCTTCTTTACTACACAAGAAAAAT CATTAACTACAAACTAAAATCATAACTACAATACAACATGTACCCTCACCCTTAATCTCACTATATATTAACCACACAAACTCATTTTGCAATTCTCATT TCTAGATCAATCTACCATTCTTTGTAAATCAAAAACTCACTTTTCTTCATTTTTCTGCATATATATATATATAGGTAATAAAGTTAGCATAATTGTAACC AAGGTAGACCTTTATCTAGTATTATAAGATTATATTAGATCATTAGATATGTCAAATCTAATGTCAAGATTAATTCTTTAAAGTTTAGTATTTATCCCAT GAATGAGTCAATTTTTGTGATAGATTGGAGGGACTAAAATGTAATTTAAAAGTAAGAGTAAAGTGTTGAGTTACTATTTGAGAAGGATCTAAGCAGATGA GAGAGAGAGAGAGAGAGAGAGAGATGAATGGAAAAGTAAGAAAGAAAGATGAATAAGAGTAGTGGGATGATGATGAGTTTCAGTGATAATAATAAGTCTT CAGTTTTCACAGTGTCTCAGTGGCAGGAATTGGAACATCAAGCTCTGATCTTCAAGTACATGCTTTCTGGTCTTCCTGTTCCACCTCATCTTCTTATACC CATTCAAATCTCCATTTCTCATCCCTTCTTCAACCATTCCTCTTTGAGTTATTCTTCCTTCTATGGGAAGAAGATAGACCCTGAGCCGGGAAGATGCCGG AGGACTGATGGGAAAAAGTGGAGGTGCTCCAAGGAAGCTTACCCAGACTCCAAGTATTGTGAGCGCCACATGCACCGTGGCCGCAACCGTTCAAGAAAGC CTGTGGAATCACAAACCATGACACAATCACCATCCACTGTGACATCAGTGACTATTGCTGGGAGCAGCAGCGCGACTGGAAACTTCCAGAACCTTGCTGC AAATGCCTTTGATAATCTGCAAGGTAGTGGTTCGGGAACCGGCCTTACCGACTACCATCTAGATTCCATTCCCTATGGGATTCCAAGTAAAGATTACAGG TATGAAGAAATCCTTGTTATATTTCACAGCACTCTGTTACTCGGAAATGGAAAAATAATTTGGCTAGAGGGAATAGAACAGAAAGTATTTCATCAATGTC ATATTGCTTGACATATTTAACGGAACTTCCTTTACTAGTTTTTCATGTTCATGTGTCGTGATATAGGCGTATGATTTTCTGACTATGATTACCATTTGTC TGTAATCTTGATATGCATAGGTCATGGATTTCTGATTTGTTTGTGGATGTTACTGTGTTTTATTGTCTTTTTTAGTATTGGGTGGTTCTCTGACTTGTGG GCTAGGGATTCAGTAGACCATGAATTGAAATTCTCTGCAAACTAATTCTTGTTCGTTACTTTTAAAAAAGGAGATAGAAATACGGTTCTTTAATTACCAT TCTAGTTTCCTTTTCTTTGCATTAAATCAAAGGGTGTACTGCATTTTATTTCTGTGAAACATAGTCCTTTCTAAATTTACCCACTAAACCTTTCTTTTTA TCACTTAACCCCTTGTTTTTTAAGAGAAAAAATTACATTGTTAGTTAAATCAAGACAGAACATAAGGCATGGAATCAGCCTTGGAACAATTAGAGTTGTG GCGTAAAGTTGTAGATCAGCAACCTCTTACAAATGTAAGGTAAGGCTGCCTATTTTAGACCCACACAGTGGGCTGATCCTTACGCGGTTCCCTGCACATA GCGGAAGCTTTATGCCATTTACTATGGAATGTAAGACACAATGCACGCCACACGACCTTCCCATTACAGAACAAAGTTTTTTCACCACTTAACCTCTATA GAGTTTGGTTTTAAGTGTCTGGACATTAACTTCTGTTTGATTTAAACTGAAAAGCGATGTTTATAGCAAAATGATTTTCAAGGGGTGTAGAAAGGTGCTG GAAAGAGACATATGGGACGGGAAGAAAAAAAGTGAGAAATGTGATGGAATGGAAGAGAGAAAAGCTGATAGGAAGAATGGTAAAAGGTGATGTAAGAGAG AAACCGGTAAAAACAGTAGACTCGTTTCATTTAAAACCAAACTACATGGAACCGTTAAGTGATAAAAAATTAAATGAGTGTTTACAAAGGGTTGCTTCCG GGGGATGAAAATGTACTTTAGAATGCTAATATGCAGCTCTGTGGAGTGTCTGCAATATCTGTCGAACAGGGAAAATTGAGAAAGGTAGGTACAGTGGGTG AGAATGTCTTACAATTTTGTTTTTGGTAGAAAGAATGTATTTCCTTTATAACTTATGAACAAAATGGTGTGTATCACTTTCTCTTCATAGCTGTATCACA ACTTCATTACTTCATTCCTTTTGACATCAAAACTCAAAAGTTATAACATGAAAGATGATTCTATTCTATTGAATATGACGTTACAATTAAATATCAAATT AATGATGCTGGTGCTAAAGGGTTCTCCGAAAGAAAAGACATATCTTTGAATTTATGCCCAAGTATTGGCTCTAGCCAAATTTGTTAGGGAGACTGCAGTC ACTGGTTGAACTGAATGATGTGATTACACTCAGACAAGTTTATACTTTTAACGGAACCTCAATTTAGTAATTTCATCTTATAATTTTCATTAGACCACTG TTGCTTCCACAATCTTTGTTGTACAGTAGAGATTAAGCTTTGATTTCATTGAATAATAGCACTTTGGTAACTAGGATAGAGCTGGTAACCCTGTGTAGTC TGCTGCTCTTTACCTTCTTCAATTTGTTCCTGTTGCTTATGTAATAATCACTGCCATGAATCATGATTATTTGTTTGTACTATTCTATTCCACGTGGTCG ATAAGGCAACTTGTTCTATGATAAATTTCAGCATAAAGTTGCAGAATATGTTAGCAGTACTGTTATTTCTCATCCCTTGAACTAAACAGGTATCTTCAAG GACTTAAATCTGAAGGTAACGAGCACAGCTTCTTTTCTGAAGCTTCCGAAAGCAACAAGGTCCCCCGAATGGAGTCACAGCTAGAAAACACATGGCCTTT GATGTCAACCAGATTTGCTTCTCATTCTACAATGAAATCAAGTAATAATCCCATGTTGCAGAATGATTATCCACAACATTCATTTTTATCTAGTGAATAT GCCTCAGGAGAAGCTGTGAAGCAGGACGGTCACTCTCTTCGACCTTTTTTTAATAAACCGCCTAAAAGCAAGGAGTCATGGTTTTGTCAGGAAGATGAAA GATCCAACCAAACATCTCTCTCCACAACTCAGCTCTCGATATCCATTCCCATGGCATCTCCCGACTTCTCTGCAACGAAGTCTCAATCCCCTGCATGATA ACTAAAAACAGCCCTTCAGGATTTGCAGTGCCATGTTATGAAAGGAGTGAACAAGTGCACTGGAATATGTCCCATGTTAATGTATTTCATTTTTATCTAT AATAATAATGATGCATTTTCTGCAGAGTTGTGTGCAACATTATGGAACCTCATCCTTTTGTTATAAGCAAGACCATATTTACTGATATGATGGGTTATTT GTGGAACCATCAAATATTCTTCCTTTTGTAACCTAATGAATCTATAACAATATTTCATTCCTGAATTATGATAATTGCTTAATAAAGTTGCTAGTCTGTT AATGATTTAAAAA BLAST |
Tissue | pods |
Gene name | LI_gene_185927; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_298723
Blastp | Growth-regulating factor 4 from Oryza sativa with 66.1% of identity |
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Blastx | Growth-regulating factor 4 from Oryza sativa with 66.1% of identity |
Eggnog | - |
Kegg | Link to kegg annotations (4330436) |
CantataDB | - |
Mirbase | osa-MIR396d (MI0013049) |
Ncbi protein | Link to NCBI protein (XP_019454355.1) |
Pfam | QLQ (PF08880.10) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |