Id Trinity | TRINITY_DN51570_c0_g1_i7 |
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Name Transcript | Ll_transcript_298689 |
Sequence | CTAAAACCTCAATTATCCTATATATGTAACTTCTCCCTGTTTCCGTGTCTGCCTCTCTAGTCTTCCACCGCCGTCGACCACCAACCACTGTCGCCGGCCG AGTTCGGCGTCGACCACCCTTTTTCTGTTCTGCACCAAAATCGTTTTGCTATTTGTTCTCACCTCTCAAAGTTTGTGTTTTTAACCTTTTTTGTTGTAGT TTCAGTGCTTATTTTCCGATACTTGGTTAAGCATATGGCTTGTGTTAGGGAAATTGGGGTCTCTGAAATCCTCCAGGGTAATTGCAGGCAATCGTTGTTT TTAGGGAAGAAGTTTCAGAGACAGAGGAATGGGAGTCGTTTGCATTGGGGTACACTTTGTTATAGGAATCGGGTACTCGGTTCAACTCGAAAAGCATTGT CTTTAAGGTGCCATGCTCAGGAAAATCCTAGAGCTGTGGTGTCCGGTGGTGCGAGCAGTTCAGTTGGTGACAAATCTGGATTGGTTGAGAAGCCTGGGTC CGAAGTGATTCATTTGTATCGTGTACCGTTTATACAAGAAAGTGCAGCTGATGAGCTTCTGAGGGGAGCTCAGACAAAAATCTCTAATCAGATTGTGGAC TTGCAGACCGAGCAATGTTATAATATCGGCATCGAGTCATCGCTTTCTAGCAGCCAGCTTTCTGTTCTTAAATGGCTTCTTGGAGAAACATTTGAGCCTG AAAATCTGGGACCTGAGAGCTTTCTTGAGAAGAAAAGGAAAGAGGGTTTGAATACAGTTATTGTAGAGGTTGGCCCCAGGTTGTCGTTTACCACGGCATG GTCTTCTAATGCTGTGGCAATTTGCCAAGCATGTGGATTGACAGAAGTGACTCGTTTGGAAAGATCAAGGAGGTACTTGTTGTATACCACTAGCGAATTA CAAGATCATCAAATCAATGAATTTGCATCTATGGTGCATGATAGGATGACCGAATGTGTTTATGTTCAGAAGCTAACGTCCTTCGAGACCAGTGTAGTTC CCGAGGAAATTTACTACATACCTGTCATGGAGAGGGGACGTAAGGCGTTAGAAGAGATTAACCAGGAAATGGGTTTGGCCTTCGATGACCAGGATCTAGA ATACTACACTAAACTGTTCAGAGAAGATATCAGGCGTAATCCAAGTAATGTGGAGTTGTTTGATATTGCACAGTCCAACAGTGAGCATAGCAGGCACTGG TTTTTTACCGGAAAGATATTCATTGATGGGCAGCCGGTGAATAAGACTCTTATGCAAATTGTGAAAAGTACTCTACAGGCAAATCCAAATAACTCAGTTA TTGGCTTCAAGGATAACTCAAGTGCAATAAAGGGTTTTCCAGTAAAGCACTTGCGACCAGTTCAGCCCGGTTCAGCGTCTCCATTAAACTTAACAGCGCG TGAGTTAGATATATTATTTACAGCTGAAACACATAATTTTCCTTGTGCAGTGGCACCTTATCCTGGTGCAGAGACAGGTGCAGGCGGTCGCATTAGGGAT ACCCATGCAACAGGAAGGGGGTCCTTTGTCCAGGCAGCTACAGCTGGTTATTGTGTTGGGAATCTCAATGCACCAGGGTTTTACGCTCCATGGGAAGACC CATCATTTACCTATCCATCAAATTTGGCACCACCTTTGCAAATTCTTATTGATGCTAGTAATGGTGCATCTGACTATGGTAATAAATTTGGAGAGCCATT GATCCAAGGATTCTGTAGAACCTTTGGAATGAGACTTCCTAGTGGGGATAGGCGGGAATGGTTGAAGCCAATCATGTTTAGTGCAGGCATTGGGCAAATT GACCACCATCATATATCAAAGGGAGAACCTGAGATTGGAATGTTGGTTGTTAAGATCGGAGGCCCTGCTTATCGTATTGGGATGGGAGGTGGGGCAGCCT CAAGCATGGTCAGTGGGCAGAATCTTGCAGAGCTCGATTTCAATGCTGTGCAACGTGGGGATGCTGAGATGTCACAAAAACTGTACCGCCTTGTTCGTGC TTGCATTGAGATGGGAGATAACAATCCAATCATCAGCATTCATGACCAGGGAGCTGGGGGGAACTGCAATGTTGTAAAGGAAATTATATACCCAAAAGGT GCAGAGATAGATATTCGAAAAATTGTGGTTGGTGATCATACAATGTCTGTTCTAGAAATTTGGGGTGCAGAGTATCAGGAGCAAGATGCTATCTTGGTGA AGCCTGAAAGTCACGAGCTCTTACAATCAATCTGTGAAAGGGAAAAGGTTTCAATGGCCGTGATTGGAACCATTAGTGGTGATGGACGTGTTGTTTTAGT TGACGGCTTAGCAACTCAGAAGTGTCTCTCAAGTGGACTCCCTGCACCTCCCCCCGCTGTTGATCTTGAACTGGAGAAAGTCCTCGGTGACATGCCTCAG AAGTCTTTCAAATTTCAGCGTGTTGTTTATGAGCGGGAACCACTTGACATTGCCCCTGGGGTCACAGTAATGGATTCTCTGAAGAGGGTTTTGAGTTTAC CATCTGTCTGTTCAAAGCGCTTCCTAACGACAAAAGTTGATAGGTGTGTTACGGGTCTTGTCGCTCAGCAGCAAACAGTTGGCCCTTTGCAGATACCCCT TGCTGATGTTGCTGTTACAGCTCAGACTTTTACTGATGTGACTGGAGGTGCATGTGCTATTGGAGAGCAACCAATCAAAGGGTTGTTAGACCCCAAGGCA ATGGCTCGGTTGGCTGTCGGAGAAGCCCTCACAAATCTTGTATGGGCAAAGGTTACTTCCCTTTCTGATGTCAAGGCAAGCGGAAATTGGATGTATGCTG CTAAGCTTGACGGTGAAGGTGCTGCCATGTATGATGCTGCTATATCTTTGTCTGAATCAATGATTGAACTTGGCATTGCTATTGATGGAGGGAAAGACAG TCTCTCTATGGCAGCTCATGCTGGAGGAGAAGTTGTCAAGGCTCCAGGAAATCTTGTAATTAGTGTGTATGTTACTTGTCCTGATATTACAAAAACAGTG ACACCGGATTTAAAACTTGAAGATGATGGTATTTTGCTTCATATTGATCTGTCAAAGGGAAAGCGACGGTTAGGTGGTTCTGCTCTTGCCCAGGCATTTG ACCAAGTTGGGGATGAGTGTCCTGATCTTGATGATATTCCTTACCTTAAAAAGGTCTTCGAAGGTGTTCAATACCTTCTTACCGATGAACTGATCTCTGC TGGTCATGACATCAGTGATGGCGGACTGTTAGTTTCTGCCTTGGAGATGGCTTTTGCTGGTAATCGTGGATTTACTTTGGACTTGGCTTCACAAGGCAAC AGCCTTTTCCAAACGCTCTATGCAGAAGAGCTTGGATTAGTTCTTGAGGTAAGCCAGAAAAATCTGGCTATTGTATTGGATAAATTGAACAGTGTGGGAG TTTCGGCTGAGATCATAGGACATGTAACTGTCACACCTTCAGTTGAAGTGAAGGTTGATGGGGTAACTTGTATAAAGGAGGAAACTACTATCCTTAGGGA CATGTGGGAAGACACTAGTTTTCAGCTGGAAAAGTTGCAAAGATTGCCGTCTTGTGTGGATATGGAGAGAGAAGGACTAAAACATCGTTATGAGCCCAAG TGGGGACTGTCCTTTACACCTTCCTTTACTGATGAAAAATATTTGTCTGCCGCGTTAAAACCTAAAGTAGCTGTGATTAGGGAAGAAGGAAGCAATGGAG ACAGAGAGATGGCTGCTGCATTTCATGCTGCTGGTTTTGAACCATGGGATGTTTCCATGTCAGACCTTCTTAATGGAAAGATATCTTTGCAATCGTTCCG TGGAATCGTGTTTGTTGGTGGATTTAGCTATGCTGATGTGCTTGATTCTGCAAAAGGTTGGTCTGCTTGCATAAGATTCAATGAGCCCCTTTTAAAACAA TTTAATGAGTTTTACAAGCGTCCCAACACTTTCAGTCTTGGTGTATGCAATGGGTGTCAACTGATGGCATTGTTGGGATGGATACCGGGCCCTCAAGTTG GAGGTGTGCTTGGTGCTGGTGGTGACCTCTCACAGCCTAGGTTCATTCACAATGAATCAGGGCGGTTTGAATGTCGGTTTACAAGTGTGACAATAAAGGA CTCACCAGCTATAATGTTCAAAGGTATGGAAGGTAGTACATTGGGGGTTTGGGCTGCTCATGGTGAGGGAAGAGCTTATTTCCCCGATGAAGGTGTGTTG GAACGCATAGTTCATTCAGACTTAGCTCCTGTGAGATATTGCGATGATGGTGGCAATCCAACGGAAACATATCCCTTTAACGTGAACGGCTCTCCTTTAG GTGTTGCGGCCATTTGTTCTCCCGATGGTAGGCATCTTGCCATGATGCCCCACCCAGAGCGTTGCTTCTTAATGTGGCAGTTCCCATGGTATCCAAAGCA GTGGGATGTGGAAAAGAAGGGGCCTAGTCCATGGTTGCGTATGTTCCAGAATGCAAGAGAGTGGTGTTCCTAAGATTATCAATTTTCTTTCTTTCCTTTT TCCTTCATTTTAATTTCCCCGCTCCAATAATTTACAGACAGGTTTACGAGTTTGCAAGTTCTTCTACTGTCTACACTAGTTAAACTCTTGCAGTTTTGCT CTTTGTGAAATTTGTCTGTAAGTTATTCAATTTTCAAATAGAGACTATCAGATTTATTTAACATCCTTACATATTTTGGTCTTTACTAAGTCAGTTCCAT ACTTGCCATTAATGTACTGAAGAATAATCTGATAATCAATGAACCTTGTTGTAGGTAATCTATATTTTGGTAAATGCTGTGTATGATTTTTGGTAACTAA TTTGGTTGCATGCTTCTCTACATGTCAACATCTTATGTGTATAATCTATCTTTTACCTCTGCATGATGAAAATTTTGTAATGCTTTCATGTGTCTCCCCT TTGGTATAAGATCTTGTTCTTGCCTGTTCCTTGTCTGAGTTGAAGCTTCTATCTTCTGAGCTTGTGGCTAATGTGGTAAGGCTGGAAGAGTGAGTTGGCG BLAST |
Tissue | pods |
Gene name | LI_gene_185980; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_298689
Blastp | Probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial from Arabidopsis with 78.74% of identity |
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Blastx | Probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial from Arabidopsis with 78.32% of identity |
Eggnog | phosphoribosylformylglycinamidine synthase(COG0046) |
Kegg | Link to kegg annotations (AT1G74260) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019419036.1) |
Pfam | AIR synthase related protein, N-terminal domain (PF00586.23) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |