| Id Trinity | TRINITY_DN51584_c5_g1_i7 |
|---|---|
| Name Transcript | Ll_transcript_300510 |
| Sequence | TGATATTCAAATTCGATAGCGATAAGATTCGAACATTGGATTTTTTTTTTTATTTTGTTTTTAATACTTCTTTGGTTTGGACTCCGTAATCAGTCGCTAT TTCCGATTAAATCGTGTTTTGTCCTAAAGGTTCTAGCAGAATAAATTGTTATTCCCCTCCTCCACACAGAAGGGCTTATTCCAAGTTCCAACATACACAA GTCATTTTATTTTAAATAGCGTTTATTTCCGAACACAAGAAAAAAAAAGATCAATTTAATAGATTTATTATTTCTATAAGATATGATATATCTATAGAAA AAATAAATCTATTAAATCATGGTTTCGCGTATCATACATATCAAATATTTTCTTTTCATATCGATGCATATGAGATTCTGGCGCAATTAATGGCTGCGAG AACGAGACTTTTTGACTTACAGTTTATTATTCTTAAATAAATTCAATATAATATTAATTTGACAGATAGATAAATTTGACAGATAGATAAAAAAATAGAA AAAATATTGCAAGTATATTTCTTACCTTGATCTGAAAAAAAAACTACCAAGTATAGTTTTTTTTTAGTAATCTTAAATAAATGAAAAGAAAATAGAACAA AGAAGACAATAAAAGAAAAAAATGTAAAATAGAAAGTAATAACCAAATCCAGTCCGTGTATCTAGGTATCAATAGACCAATACAATAAATTATTTTTATA TTCGAAACCCGTTATAAAAGAGGAGAATGGACGGCTACGAGAAAAAAAGCACATATAAATGAGAAAAGCCTCGAAGGTCCTATCCCTGAAAATGTCATGA GGTGTTCGGAAATGGTTGAAATAGTTGAATAGGAGGATCACTATGACTATAGCGCTTGGTAAATTTACTAAAAATGAAAAAGATTTATTTGATATTATGG ATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTACTCTTTCCTTGCGCCTATTTCGCCTTGGGGGGTTGGTTCACAGGTAC AACCTTTGTAACTTCATGGTATACTCATGGATTGGCAAGTTCCTATTTGGAGGGCTGCAATTTCTTAACCGCTGCAGTTTCCACTCCTGCTAATAGTTTA GCACACTCTTTGTTGTTACTATGGGGTCCGGAAGCACAAGGAGATTTTACCCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTTCACGGCG CTTTTGGATTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAATTGCGGCCTTATAATGCAATTGCATTCTCTGGTCCAATTGCTGT TTTTGTTTCCGTATTCCTGATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGCGTAGCAGCTATATTTCGATTCATCCTCTTTTTC CAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCTGGTGTATTGGGCGCTGCCCTACTATGCGCTATTCATGGTGCTACCGTGG AAAATACTTTATTTGAAGATGGTGATGGCGCAAATACATTCCGTGCTTTTAACCCAACCCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTT TTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGA GTAGTCGGTCTAGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATA TTCTCTTAAACGAAGGTATTCGTGCGTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT TTAATGGAACTTTAGCTTTAACTGGTCGTGACCAAGAAACTACCGGTTTCGCTTGGTGGGCCGGGAATGCCCGACTTATCAATTTATCTGGTAAACTGTT GGGGGCTCATGTGGCCCATGCCGGATTAATAGTATTCTGGGCCGGAGCAATGAACCTATTTGAAGTGGCTCATTTCGTACCCGAAAAGCCCATATGTATG AACAGGGTTTGATTTTACTTCCCCATGTAGCTACTCTAGGTTGGGATGTTTTATTATCCTTTCTCACTCCCCCAAATGAACAAAAATGAACTGAAAGAAA AGAGACTTGAATCCATGTGATACTCCATATTAGTGCATTTCATCTTTGAATATGGGAGATCAGATTGAAGTTGGACTTGAGGATTGTAAAAATGTAAAAG ATTAACTATTTTTTAACTTTCACATGTTTATCAATTGTATCCGAGACAATAAGTTGAGGTGGTGGAGCACTAGAATCAGGTGTTTCACTTAATGCAGGTC TTTCTTGTCTTCAACTGCATGTGTTGTTTTGAATTGCCATGTATTTTTCTGGATATTTGATCGCGGATTGTAGAACTGTCTACTATTGCATTTCCATATT CTTGGGAAAATAAAGAAATTCTAGTCCTTAAGCCCTCAACTCATCCCAAATAAATGTATCCCTCCTATGTTATAATATTAAAACCTGTACTATGAAAAGA GACTAATTTTTTCACTTATTTTCTTTCGGTATCACAGGTAATCTTCTGCGTTCAGGTGATGTTAGAGGGTTCCAGTCCATGGCAAGAATGTACACAAGAC TTGCTGCAATGCCAAAGAAAGGTTAAATTATTTCAGATAACTTTTTCCAATGTTTGCCTAGGCTATTGGGAGAGTATATGAATTTACTATGTGTTTGAGT CCAAAGACTTGTGATAAGTTAGTAGTAGGAACAACTGTTATATGTTCTGGTCTTTATTCTTTTAAATGTTATACATTTAAAGACATGGCTTTAATTGTTT GATTCATGTTAGAGTTGAGACTTGTACAAGAAGAGAAGAGAGTGTAGATTTGACTTAGCAAATGAAACCATATAAAGTGGTTCCTGATAAAAAGTGTCTT AGCCTCACCATATAAGGTTGATTAAAT BLAST |
| Tissue | pods |
| Gene name | LI_gene_186074; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_300510
| Blastp | Photosystem II D2 protein from Jasminum with 99.43% of identity |
|---|---|
| Blastx | Photosystem II D2 protein from Nandina with 99.43% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | Link to cantataDB annotations (CNT0002079) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (YP_008963600.1) |
| Pfam | Photosynthetic reaction centre protein (PF00124.18) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |