Ll_transcript_299070

• Id Trinity: TRINITY_DN51594_c3_g5_i1
• Name Transcript: Ll_transcript_299070
• Sequence: CAGAGCACCATCTTGGTGCCTGAGGTGTGGGAATTATCACCAATTCGCTGCGACAAGGATCTCTGGTGGCCTATGGTGTCTACGAGAAGTATGGCTAAAG AAGGTGAAAACTGGACACAAGAAAGGGATGCATTGCGGTTGGAGAGAGAAGAGGTGCGTCTTCGGTTGGAATTGAATGAAGCCAGAACCAAGAAGACGGA GGATTTGGTGGCTGCCATTGCTGCGAAGTTAGGCATTGATACTGGGGAGGATGATCAGGGGGAAGGCAGTTATAATTATGAGGAGATGGATGGCAACCGA GAACAGACAGGTCATGACAAATGAAGAAAACTTGAAATACCAATCTTTGGAGGTGACGATGCTTTTGGGTGGGTTCAAAAGTTAGAAAGGTATTTCAATT TGAGGTGTCACGGATTCAGAAAAAATGCTGGCGACTATAGTAGCATTGGAAGGGAGAGCCTTGAGTTGGTTCCAATGGTGGGAAGGGTGCAACCCCTCAC CCACTTGGGAAAGCTTCAAAGTGGCGGTGGTGAGAAGGTTTCAACCATCCATGGTTCAGAATCCCTTCGAATTGTTGCTATCTCTGAAGCAAGATGGGAA TGTAGAAACTTATGTTGAGGAATTTGAGAAGTATGCAGGAGCCTTAAGGGGAATTAACCAAGATTTTATAAGAGGAGTATTTCTGAATGGGCTCAGGGAG GAAATTAAAGCGGGGAGTGTGTCTGCTCACTTTAAGGGTACACTCGAGGTGGAAGGATCTAAGGTAATGGGCGACTACAGAAAATTGTCAAGTGCTGAAA TGAGAGAAAAGAGAGAGAAGGGCCTCTGTTTTAGGTGTGATGAACCATATTCCAGGGAGCATAGGTGCAAGAATAAGCAATTGAGAATGTTGCTTATGGC AGAAGAGGATGAGAATGATGCAGAAGAGGGATTAGACGCAGAGGTGGGGAGCTTCACTTCCCTGCAATTGTCTCTCTGCTCAATGAAGGGTCTCACATCC ACCAGGTCTTGGAAGCTTGAGGGGGTTATCAATGGTCATCCCGTAGTGATTTTGATTGATTGCGGTGCCTCACATAACTTCATTTCCAAGGAGTTAATGA CTCAATTACAGCTTAAGGTGGAACAGACCAGATCATACATGGTAGAGGTGGGTGATAGCCACCAGGTTGCTTGCAGTGGAAAGTGTTCTCAACTAAGGGT AGAAGTGCAACAAATTGAGGTAACTCAAGACTTCTATTTGTTCACTTTGAGAGGAGTAGATGTAGTGTTGGGATTGGAGTGGTTAGCTACTCTTGGTGAG GTCAGGGCTGATTTTGGAAGGATGAGATTGATGGTGAAGAAGGAAGACTCATTGGTGACCTTAATTGGTAATCCTGCTCTAGCCAAATCGGAACTATCCT TAGGTGCATTCATGCATGTTTTACGACATCAAGGGGAGGGCTTGCTAATTCAGTGTGATGATTTCTCTTCCATTGAAACAGAGAAGCCGATTCCAAAAGA ATTGGAGTTGTTATTACAACAGCATGAAGAGGTATTCCAAGATATGCAAGGGCTACCACCTTCAAGAGAGCATGACCATGCCATATACTTGAAAGATGGT GCTGATATCTCCAACATCAGACCCTACAGATGCCCTTACTACCAAAAAGCAGAAATAGAAAGGTTGGTGGCAGAGATGCTTGAGGCGGGGGTAATCAGAC CTAGCATAAGCCCTTATTCCAGTCCTGCCTTATTGGTGAAGAAGAAGGATGGAGGGTGGAGATTTTGTGTGGACTACAGGGTTCTCAACAAAGTCACTAT CCCGAATAAGTTTCCTATACCTCTGATTGAAGAATTGTTGGATGATTGAGTGGTGCTAAGGTGTTTTCCAAGCTTGATCTCAAGTCAGGTTACCATCAAG TCAGGTTACCATCAAATCAGAATGAGGCCTCAAGATGTGGAGAAAACAACATTTAGGACTCATGAGGGGCATTATGAGTTCTTGGTTATGCCCTTTGGGC TAACCAATGCTCCCTCAACATTCCAAGCCCTTATGAATGAAATTCTAAAACCTATCTTGAGGAAGTTTACTCTAGTTTTTTTTTATGACATTTTGGTGTT CAGTCCTGACCTATCTTCTCACATTCTACATTTAGGGGAAGTCATAACCTTGCTTGGAGAACATTCACTAAAGGCCAACTTGAAGAAATGCAGTTTTGGG AAGGACAGAGTAGACTATCTTGGGCACACCATATCAGCAGGTGGAGTATCAGCTGACGGTTCCAAGGTTGAAGCTATACAAACTTGGCCTCAACCTAACA ACATTAAGGGTTTGAGGGGATTCTTGGGCTTAACGGGGTATTATCGGAGGTTTGTTCAGAATTATGGAAGGTTGGCCAAGCCTCTCACTGATTTACTCAA AAAGGATTCATTTTTGTGGACTGAAGACACCAACTCTGCCTTCACTCAACTTAAGGCTGCCATGACAGAGTTGCCTATGTTGGCCGTACCAGATTTCAAC AAACAGTTTGTGGTTGAGACTGATGCCTCTAGTAAGGGGTTAGGAGCCGTTTTGATGCAAGAGGGTAAGCCCCTTGCACTTTGGAGTAAAGGTTTGTCTT TAAAAGCTCAACAAAAGTCCGTCTAGGGAGTTGATGGCCCTTGTGCAAGCTATACAAAAATAGAGGCATTATCTCTTAGGAAGACACTTTGTTATTAAAA CGGATCAAAGAAGTCTTAAATTCCTTGCTGATCAAAGGTTATATTCAGATGAGCAATTTAAATGGGCTGTGAAATTGATAGGCTTGGACTTTGAGATCCA ATACAAGCCTGGGAGGGAGAATTCTGCAGCTGATGCCCTATCCAGAAGGCTTATGTATGCTGCTCTATTTATGGTGAATAATGAGGAAGTGGACAGTTGG GTACAAGAGTTGCACTTGGACCAGAAATGGAAGAAAATCATGCAGGATTTGGTCATTTCCCCTACTGCTCACACGCGGTTTGCTTTGAGGAATGGAGTGC TCTATTACAAAGACAGGTTGGTGGTCTCTAAAACTTCCAATAGGATTCCTATTATACTATCAGAATGCCATGAAACTCCTAGTGGTGGACATTCGGGATA TTACAGAACCTATAAAAAATTGCTAGTTTCCTCTATTGGGAGGGGATGAGAGCGGATGTCGAGGCTTTTGTGGAAGATTGTGATACTTGCTAGAGGAATA AATACTCTACTCTAGCCCCTGCGGGATTGCTTCAACCCTTACCCATCCCTCAACAAGTGTGGATGGATATATCCATGGATTTCATAAGAGGGCTTCCTAG AGTGAGAGGTAAGGATACTATCTTGGTGGTGGTTGACAGACTTACAAAATATGCACACTTTTTTTATGCCTTGGGACACCCCTTCACTGCTAAGGATGTG GCTGCCTTGTTCTTAAAGGAAGTGGTCAAGCTCCATGGTTTTCCAACTACTATCGTCTCTGATAGGGATCCTCTATTCTTGAGCCAATTCTGGAAAGAAC TCTTTAAAATGGCTGAGACTCAACTGAAATTGAGTACTTTTTATCACCCTCAAACAGATGGGCAATCTGAGGTGACAAATAGATGCCTTGAGACTTATCT GAGGTGCTTTGTGGGGCCTAAACCAAAACAGTGGGTAGAATGGTTTCATTGGGCAGAATTTTGGTTCAATTCCAATTATAACACTTCTGCTGGTATGACC CCTTTCAAGGCTCTATATGGCAGAGAAACGCCTATACTATTGAAGGCAGGCACTGTTCCATCCAGGGTTGAGGAAGTAAACAGATTGTATAGGCAAAGAG ATGATGTTTTGGAAGAGTTGAAGGGTAATTTAGCTAAGGCACAGAATTTGATGAAGCAGTATGCTGATAAGCATAGGAGATTCTTGGAGTTTAAGGTGGG AGATTGGGTTTTTCTCAAATTGCAACCCTACAAAATGAAGTCTATAGCTACTAGACCTTGTGCTAAATTGGCCCCTATATTCTATGGACCGTACCAGGTC ACAAAAAGAATAGGTGAGGTAGCTTATTAATTGGAACTTTCTGCTCATTCCAAGATCCATCCCGTATTTCACATCTCACTGTAAAAGAGAGCCCTCAAGC CTCATCAACAACCTCAACCTCTTCCCACTATGTTGAATGAGGAGTTGGAACTGTTGGTCAACCCAGAAGACGTGATTGATAGCAGAATAGACAACCACGG CAATGAGGAGGTGCTGGTTCAATGGCAAGGACTTCCTGGTCATGAGAATAGTTGGGAACCACTAGCTCAATTACAGGACAGCTTTCCCCAATTTCAACTT CCGGACAAGTTAAGATTTCTATGGGGGGGTATTGATAAGGTTCAATATAAACCAGAGATAAAGCATGTGTATAAAAGAGGTGAAAGGAATGTTTGGTTAA ATAAATAACCAAG
• Tissue: pods
• Gene name: LI_gene_186173;
• Additional information: details;

Expression of Ll_transcript_299070

FPKM

• PAB: 0
• PNAB: 0.2
• PS1: 0.2
• PS2: 0.3
• PS3: 0.3
• PW1: 0.1
• PW2: 0.2
• PW3: 0.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_299070

• Blastp: Transposon Ty3-I Gag-Pol polyprotein from Saccharomyces with 42.74% of identity
• Blastx: Retrovirus-related Pol polyprotein from transposon 17.6 from Sophophora with 43.67% of identity
• Eggnog: -
• Kegg: Link to kegg annotations (YIL082W-A)
• CantataDB: Link to cantataDB annotations (CNT0002695)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019416449.1)
• Pfam: Retrotransposon gag protein (PF03732.16)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;