| Id Trinity | TRINITY_DN51609_c2_g1_i11 |
|---|---|
| Name Transcript | Ll_transcript_410707 |
| Sequence | GCCACCTATGACTCTACACGAAGACTACTACTCTGTCCACACGGTTCATACGCTCATTCTCCCACTCCCATCCCTCTTCAATTTTCAATATCCATTCACT CCTTTCTTATGACCCCACATTCATAACTGTCACTCAAATCCTTTATTTCCCATTCTCCATTTATACTCAACCAACACTTTCCCCTCACCAATTCCCCAAA CCATGTCTTCTCCTTCTCATTACACTCTCTTCCTCTCTTTCACCCTCTTAATCCTCTGCGCTCACCTCCACGCTCAGGATCTACTCTCAGATGGGGTCCA CAACGCTTCTAACCACACGCTTCTCAGACTCCCTTCAAATGACGTGGAACCTTCTTCCACGTGTGAGCAGACGTATGGATTCTTACCGTGCACCACCACC GTATTGGGAAACACGTTCTTGATAATTGTGTATGGGTTTCTCATGTACACTGCTGCTACGTATTTGTCCGCTGGTAGCGAGCTTTTGCTTGAGATCTTGG GACCTGGCATCGTTGGAGGATTGTTTCTTCCTATTCTCGGTGCTCTTCCAGATGCCATGCTTATTCTCGTATCTGGACTTTCCGGTACTGCTGAGACTGC TCAAAGTCAGGTCTCTGTTGGAATGGGTCTGCTAGCTGGGTCAACAGTTATGCTTCTGACTGTAATATGGGGGACCTGTGTAATTGTTGGCAAGTGTGAC CTTGAAGGTTCAATTGCAATAGATTCGCGTGATACCAGGGGATTTCATTTAACCAGTTCTGGTGTTAGTACTGATATTTGGACAAGTTATGCTGCTAGGA TTATGGTTTTATCTGTCATTCCATTTTTGATCGTTCAGTTACCGCAATTGCTCAGCTCAACTTCAGGAAGGCACTTCGCTATTTTGATTGCTCTTGTTGT CTCCATCTGTTTATTGATTGTGTATTGCCTTTACCAGGTAAATTTCTTTTTATGGTGCAATTGTTTTTCCTTCTGCATTCTGATCTCTTTCTATATCCAA ACACTTCTAGTTTTGTTGATAGTATTTTGTATATATATATGTACATATACATTTCACCAATGAAGAAATGGGTAGTGTAGGACTTCAGTCTTTTGTTATA GTTAGGTTTCTTTTATTTTTTATCATGATTTAATGAAATTAGTTTTAATTGATATCGACCTGCACTGTTGTGCTTAACTCTGATGACACATTCCATGGAT GTTATGGTTAGAACTTTCAGTAGCTGTATTTGGACGAATGTTTATTCTCTATTATTTGGACACCTCGTCAGTCTTTTTATTATTTTAAAAATTGATAAAA ATTTAATAAAAAAATGGTACAGGTTTTCCAGCCCTGGATACAGAGGAGAAAACTTTCATATGTTAAACACAAACATGTAATCTTAGGACTTTTGAAACAT TTGAAGCAACGTGCATTGGGAAGGCTGCTAACAGAGAATGGTGAACCTAACATAAAAATTATAGAAAAGTAAGGTTATCTCTCCTTTTTGCTTTGACTTC AGAGATGTTACTTACAAAGCATACATTGTGGTCTTTTCATATGTTCATCCATTTGGTTTTCTCTTCCTTCTCAATGGAATATACAGGTTGTTTGATACAA TTGATGAGAATAAGGATGGTGAACTTTCTCACGGTGAATTGAAAGCGCTGGTTGTTGGAATTCAATTTGAGGAGGTTGACCTGGATCATGAAGATGCTGT GACAAAAATAATACAGGACTTTGATGTTTCGGGTAATAATCGTGTTGATAAAAAGGAATTTATTAGTGGCACTTGTAGATGGCTTCAAAAGGCTAAGGGT TCTCGAGTTGCATCTGGTGATGCTGGTGCACACACAATGAAGTTTTTAAGTGATTTTCACGATGAAACAAAGAGGGAGCACGATCTTCTTGATGTTGGGG GTGAGAGTGATGAAGTCATTGAAGGCGTTGGAAATGCTGGGTGGACTACCGTCAAAGCTGTGCTGCTGCTGGTGCTGGGATCTCTTATTGCTGCTGCATT TGCTGATCCTTTGGTTGATGTAGTTCATAACTTTTCTAATGCTACAAGTATTCCTGCTTTTTTCATTTCCTTCATTGCTCTGCCTTTAGCCACCAATTCA AGTGAAGCAGTGTCGGCAATAATTTTTGCTAGTCGTGATAAGAGGCAGACTGCCTCACTAACATTTTCCGAGATATATGGGGCAGTGACAATGAACAATG TGCTTTGCCTATCAGTCTTCTTGGCCCTGGTTTACGCGAGGGGTTTGACATGGGACTTCTCTTCGGAAGTGTTAGTTATTCTCGTCGTCTGCGTCGTCAT GGGCGCCTTTGCCAGTTTCAGAACCACCTTCCCTCTATGGACATCCATAGTAGCCATCCTCCTTTATCCTTTCTCCTTGGCATTAGTCTATGTTCTTGAT TATGTATTTGGTTGGTCATAGACCATATAACAATGTTTTCTATGTGTTAGTGCCCTGTATGGCTATTACTCTTGGAGTGTGTGTTTATTATAAGTTGTGT TCTAGAGATTGTGTGGTGTTATTGATTCCAAGTTGGGATTGACATGAAATCGAGAATTTGGGATTTTAATTATGCCCTTTTCATGCATTCTTTATTAGTA TAGTTTTTTTTGGTATTATAAATGTATCCCTTCGTCTTTTTAGGTAAGGAACTAATCATTTTGGGGTGTAGTTATTTCTCTAAACAAGTGCCACTTTCAA GAATCGAATATTTGACCTTTTGGTCAATATGGAGATTTCGGAGCCTTACATCACTAGACCAATACTTTACTGGTGAGAATAGGTATTGTTTTGACACAAT TTGCT BLAST |
| Tissue | pods |
| Gene name | LI_gene_186301; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_410707
| Blastp | Sodium/calcium exchanger NCL1 from Oryza sativa with 73.06% of identity |
|---|---|
| Blastx | Sodium/calcium exchanger NCL1 from Oryza sativa with 66.07% of identity |
| Eggnog | Calcium-binding EF hand family protein(ENOG410ZVKW) |
| Kegg | Link to kegg annotations (4325568) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019443893.1) |
| Pfam | Sodium/calcium exchanger protein (PF01699.23) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |