Ll_transcript_409876

• Id Trinity: TRINITY_DN51640_c2_g1_i4
• Name Transcript: Ll_transcript_409876
• Sequence: CCAATCGCCCCTTACATATCATATCCACACTCTACAATGAGCAAGAACTGAACTCCTAATAGAAGCTCCACAAAAATGGAGTCTCTCAAATCCCCTTTCC TTTTCTCCACCTCTTTCCTCCCTCCACCTCTTAAACCCACAACCACCACCACCCCCACCACCACCAAACCCATCATTCCCAAAATCCACTCCTCTCTCCA CCGCGACCCATGGTCCCCCATCGACGGCGACATAACAAAACCCAAACCCAGAACAAAGGACCCAAGCAACCCTCTCTCCGACGACAACGCGCGCCGCATA ATCAACGGCAAAGCTCGCTACCTAAGCGTCCTCAGAAGGAACCAGGGCCCTCAGGCTGAGACACCAAGGTGGATAAAGAGAAGCCCTGAACAAATGGTTC AGTACTTGGAGGATGATAGGAACGGACAACTCTATGGGAAGCATGTTGTTGCAGCGATTAAGAAAGTTAGGGCTTTGTCACAAAGGGTTGATGGTGAATA TGAGATGAGAATGGTTATGGCAACTTTTGTTGGCAAACTTAGCTTCAGGGAAATGTGTGTTGTGCTTAAGGAGCAAAAGGGGTGGAGACAAGTTCGGGAC TTTTTTGCTTGGATGAAATTGCAGCTGAGCTATCGCCCCACTGTTATTGTCTACACGATTGTATTGCGCTTATATGGGCAAGTTGGAAAGCTAAAACTGG CTGAAGAGACGTTCTTGGAGATGCTTGATGCAGGGTGTGAACCAGATGAAGTTGCTTGTGGTACCATGCTTTGTTCATATGCCAGATGGGGACGCGACAA GGCTATGTTTTCTTTTTATTCGGCGGTAAAAGAAAGGGGCATCATACTCCCTGTTGCCGTTTTCAACTTTATGTTGTCCTCTTTGCAAAAGAAATCACTC CATAGACAGGTTGCACTATTGTGGATGGATATGATAGGAAAAGGGACGATACCTAATGCTTTTACGTATACAGTAGTCATCAGCTCGCTAATCAAAGAAG GGCTGCATAAAGAAGCTTTAAGGACTTTCGATGAAATGAAGAATAATGGATTTGTTCCCGAGGAGGTAACTTATAGCCAGCTTATAACTTTAAGTGCTAA AAGTGGAAACAGGGATGAAGTGCTAAGACTGTATGATGATATGATGCTTCGAAGAATAGTTCCTAGTAATTACACTTGTGCTTCACTTCTGGCTCTGTAT TACAAATACGAGGACTTCTCAAGAGCCCTCTCCCTCTTTTCGGAAATGACATTTGAAGAGACAAAGCAGAAGGGCCTGTTGACCGATGAGAAAACATATT TGGCAATGGCACAAGTCCATCTTAGTTCAGGAAATGCAGACAAAGCTTTGGACACTATCGAGCTCATGAAGTTTAACAACGTATGGTTCTCTCGATTTGC TTATATTGTCCTGCTGCAATGTTATGTGATGAAAGAAGATGTAGAATCTGCTGAAGGATCATTTTTAGCTCTCTGCAAGACAGGACCACCTGATGCTGGT TCTTGTAATGATATGCTCAGTCTCTATATAAGACTTAATTTGATGAACAAGGCCAAGGAATTCATTGCCCGAATAAGGGAAGGTGATATACTTTTTGACG AGGTGCTTTATAGGATGGTTATGAAGGTTTATTGCAAGGAAGGAATGCTGCTAGAAGCTGAGCAATTGACAAATCGGATGGTTAAGAATGAATCTCTTAG AAAATATAAATTTGTCCAGACATTTTATTGGATTCTTTGTCAGTGTAAAGAGGATGTGCAATCTGATGATGAGCTGCTAGCCATTGAGCCTATCGACAAA CTTGACACTACAGCTCTTGGGCTGATGCTCAGTTTATATCTGACAGATGGCAACTTCGGCAAGACAGAAATGTTATTGAAGTTATTGCTGGGTTATACCG GGGGATCAAAAATTGTTAGTCAGCTAATCACCAGTTTGACTAAAAAGGGAGAAATCAGTAAAGCAGAATCGCTTAACAATCAACTAATTAGGTTTGGCTA TGGAATGGATGAAGCCACTGCAGCTTCTTTAATTAGCCGTTACGGAAAACAACATATGCTGAAACAAGCTGAAGATATATTTGAAGCATATGTAAAGTCT CCTATATCTAGTAAACTATTATATAACTCTATGATTGATGCATATGCTAAATGTGGTGAACAAGGAAAAGCATATTTGCTTTATAAGCAAGCAAGAGAGG AAGGGCATGAACTGGGCGCAGTTGGAATTAGCATTGTCATAAATGCTTTAACAAATGAAGGAAAGCACCAGGAGGCAGAGAATATTATCCGCAGGAGTCT CGAAGGAAACTCAGAGCTTGACACTGTGGCTTACAATACCTTCATCAAAGCCATGCTTGAAGCAGGCAAATTGCAATTTGCATCCAGTATATATGAGCAC ATGTGTTCTATCGGTGTTGCTCTGTCAATACAGACACTTAACACCATGATAAGTGTCTACGGAAAAGATCAAAAGTTGGATAAAGCTGTGGATATGTTCA ACAAGGGTCGCTCATTGGGTTTGCCTTTGGATGAAAAAGCATACATGAATTTGATCGGCTATTATGGGAAGGCTGGTATGATGGACGAAGCTTCCCAGTT GTTCATTAAAATGCAGGAAGAAGATATAAAACCTGGAATGGTCAGCTACAATATTATGATCAATGTATATGCTAATGCTGGACTTCATCATGAAGCAGAG AAACTTTTCCTAGCCATGCAGAGACAATGTTGCTCGCCTGACTCTTTCACTTATCTTTCCCTTGTCCAAGCATATACAGTGAGCCAGAATTACTCTAAAG CTGAGGAAACAATACACGCCATGCGGAGCAAAGGCATTCCACCATCTTGTGCCCATTTTAATATTTTACTGTCTGCATTAGCAAAAGCGGGGCTGATCAG TGAGGCCAGGAGGATATATGAGCAACTGTCAGCTTTTGGTTTAGTTCCTGATCTCGTATGTTACCGAACAATGGTGAAAGGTTACCTGGAACATGGATAC GTGGAAGCAGGTATCGACTTTGTCGAGAGTATAAGCAAGTCAATAAAAGGAGACAGGTTCATCTTGAGTGCAGCTGTGCTTTTTTACAGATCTGCTGGAA ATGAAGGGAAAGCTAAAGAAATATTGATTTCAATGAACCACTTGAAGGTCCCATTCCTGAAGAAACTTGTAGTTGGATCAAGAATGAAAGTCAAAACTCC TTGAGATACAAAATACTTTAGAAATGTATTTGTGTGCTTGAAAAGCAATTGTGGAGAAAGGCTGACTATGACTTATAGAAGGCATGTAAAAATCTAATCA GTCTGATAATGGTGATGGTGATACTGGTCCGAGTTAGCTGCAGTGTATCTCGGTCAATTAAATCCGGATATGCCGAAAGAACACAAGCTACTTGATTAAA TGGAGTTGAACCAATGATATGCATGTGCCAACTATTGCATGGGGTGGATTGTGAGGGTTGTCTAGAATCCTTGACTGTTTGGTCCTAACTTTTTTCCTTA CATTCTGGCTGAGCTAGACTGTAACAGGTATAACATTTCCCTCATACTGGGTTTACTGCAAATAGTGTAAAGAAAATTTAACATTTTCTCCCATAGTACA CAGTTAAATCTTTTTCTATTTTGTATCATTGTATTGACTGATGTATCAATAATGACTTCAAAGTTATTCATTTTGTTACTGTTAATTATCAAATTAGAAA ATATAATCACTATTTTAG
• Tissue: pods
• Gene name: LI_gene_186539;
• Additional information: details;

Expression of Ll_transcript_409876

FPKM

• PAB: 0
• PNAB: 0
• PS1: 0
• PS2: 0.2
• PS3: 0
• PW1: 0.8
• PW2: 0
• PW3: 0.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_409876

• Blastp: Pentatricopeptide repeat-containing protein At5g27270 from Arabidopsis with 54.09% of identity
• Blastx: Pentatricopeptide repeat-containing protein At5g27270 from Arabidopsis with 55.31% of identity
• Eggnog: Pentatricopeptide repeat-containing protein(ENOG410Z7Z7)
• Kegg: Link to kegg annotations (AT5G27270)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019432635.1)
• Pfam: Pentatricopeptide repeat domain (PF13812.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;