Ll_transcript_409056

• Id Trinity: TRINITY_DN51655_c0_g1_i11
• Name Transcript: Ll_transcript_409056
• Sequence: CTTGAAATAAAAAAGTTGGAGCTGAAGGGTGTAGTTAGAGGTTGACTGTTTGAGTTGAATGGCTTTATAAGCAAACAAAAAAGTACAGAACCCACACTCT CTTGGGTCATCCTGTTCCTCAAGTCTTGCACTCAGAACTATTTCTCTGCAACCAAATCCTTTTTAGGGTTTCACTCATTGATTCTTCAATTTCCCCATAA CAACAAACAAACATTACCATTGCTTGGATTTAAGATTGATCTTCAAGATTCTGATTCTGAATACCTCGAACTTTCAATTTCTACTTTGAACTCAAAAACT CACTTTCTGAATGATGGAAAGGTCTAGATCTAAGAGAAACTACTACTATGACCAAGACTATGATTCTGAAACCTTAGCTCGGACGAGGCCTCGCTATAAC CACCACTATTCCAATCGCCACCGTGGCGCCTCCGGCAGCCGCGGTGGCCGTCAGGCTAAGCCACAGCAGGACGTGCCGGCAACGGTTACCACAAGTTACC GCATTCTGTGCCATGATTTAAGGGCCGGCAGCGTGATCGGCAAGTCCGGCAATATTATTAAGTCAATTCGGCAGCACACCGGCGCGTGGATCAACGTGCA CGAGCTGATCCCGGGAGATGAGGAGCGTATCATCGAGATTTCGGACACGCGCCGCCGTGACCCAGGCGGGAGAATGCCGTCGTTCTCGCCGGCGCAGGAG GCGCTGCTCCTCATCCACCAGAGGATTCTGGAGAGCGACGCGGCGTACAGGGTGGCTGAGGAGGAGGAAGAGGAGTATGGTGGTGGCGGCGGTGGGAGGA ACCGGGACCGGGTGGCGATGAGGTTGGTGGTGTCGAGAATGCATGTTGGGTGTTTGTTGGGGAAAGGAGGGAAGATTATTGAACAAATGAGGATGGAAAC AAAGACACAAATTAGGATACTCCCTAGAGATCACAACCTACCTCGTTGTGTTTCAATGTCTGAAGAAATTGTTCAGGTTACAGGTGATGTAAATGCTGTG AAGAATGCTCTAGAAGTGATATCATCACGGTTGAGGGAGAGCCAGCATCGTGACCGCAGCCATCTCCAAGGACGTGGACATTCACCAGATCGTTTTTTCC CACCTGATGATGATTACATTCCTCATGGTGGATCTCGTAGATCGTCTGTGGAGGAGGCTGCTTTGGGATCACGAATATCCACTACCAATGCCAGAAACAA TAACCATATGTCACCAGGTTATGCAATGGAGTCAGGGGCTGCTATTGATACTCAGCCCTTCTACGGAGAGGACCTAGTTTTCCGTATACTTTGTCCAGTT GAGAAAGTTGATCGTATCATCGGGGAATCAGATGGAATTGTAGGTTTTCTTCAGAATGAAGTTGGTGTTAATATCAAGGTCACTGATCCCATTGGTGGTT CAGAGGAGCGGATAATTATCATTACTTCAGAGGAGGGTCCGGATGATGAGTTGTTCCCAGCTCAGGAAGCTTTGTTGCATATTCAAACTCGCATTGTCGA TCTTGTTCTAGATAAGAACAATACTATAACCACCAGGCTTGTCGTCCCATCTAGCGATATTGAATGCTTAGATGGAAAAGATGCATCACTATCAGAAATA GTGAGGTCGACTGGTGCTAATATTCAAATTCTGCCTAGAGAAGAACGACCTCTCTGTGTTGCAAAGAGCGATGAGTTAGTACAGATTGTAGGAGAAATAA AAGCAGCTCGAGATGCTGTTGTTGAGGTGACATCAAGATTAAGAAGTTACTTGTATAGGGATTTCATTCAAAAGGATACAGTACCTCCAACAGCCCCCTT ATCTAGCGTTGAGGCATCTTCCTCCAATACTATAGCTCCAGCTATTGAAACATCCACAACCTATCAGAATGTGCAAACTGTGGCAGCAGCAGTTCTACCA TCGAAGAAGGAAACTGGAGGATCTAGCATGGAGGCAGGAAAGCAGAAAGACAATGACCGTCGGGATGATGTGCAGAGTGGTTTAAATAGGATCACCATGC CACTTGTCACAAGGAGCATTCTTGAAGTTGTTATACCGGAGTATGCAGTTCCAAAGCTTATAGCAAGATCCAAGAGCAAGCTTGCACAGATAAGTGAGTT GTCGGGAGCGAATGTAACCCTTGTAGAGGATAGACCAGATGTGACACAGAAAATTATTCAGCTATCTGGTACTCCAGAACAGGCAGAAAGAGCCCAGAGC TTGCTCCAAGGATTTATTTTGAGCACACAAGAAGATGGCCCTTAAGTGATGGAATACCGATAGCTGGTTAGACAAAAGTGCCGTTGTTTTATTCTCTGGG GCATTTTGTTACATGCACTAATTGGTATTTCATGTGTTTACGAGACTGTTGTCGCCTAGAGTTTGGGTTTTCAATGGGAGAAGCATTCCAATGTAAATGT TGTTGTATTAAGAGAAATTTTTTTGTTAGTTGTTTTATTAGTATTTTCAGTAAGTGTGGGGGAGCAAATGTTGGCTACCCTGCTAGACCTGTTATTTTTT GAGTAAGAAGTGGGAAGTTTTTCATGGAAGATGAATCAGAAGCTTTTTTGCCTCAATTACTAGAAGTCCTTGCATGCTTGTAGTGCATCAACTATAAATG CATGTTCCAGGAAACCCATGGGTTAAAATTGTTACAAGTTGAGTTCAGGTTTTGGAATTTGCACCTGCATGCAAATGGGGACAGACTTTTAAAACCCGGT AATTGGACGAGGCGGATACTGGTGCATCCATACTTGTGGGTATCCGCACTGACCGTATATATATAGAGATAACTTCCCACATTTTCCCCTAACCTGTTCT CATTGTGTTGATGCTGTCACTGGAACTGAAACCCTAAACATGAGATGTGTTGAACCATGTTACTTGGTTGTTGCCATCATTGTTTAATGCTTGAAAAGTC ATGCCGCCATCCACCTCGGATTGCCATCGACTTCATTGTGTTGCTGGTCGCCTGGTTGTTGCTTCCTTCAACCTTGAATTGTGAATTCTGATGCAGAACA CAATTATGACCTCAAATTGCAACGCCGCACAAGATTGTAAGAGGTAAACACCTCTACACCTTGACCAATTTGTCTACTCTGCAGTGCCATTAAAATTACT TTTTTTGTTCTAGTGATTTGGAAATATGAATCTCCTTTTTTCGCTTACAGTTACACCTCTAATCTATAAGTTATCCTGCTTCTTTTAAAAAGGTTTTTTT GTTCTCTCATAATTATTTCCATCTTTATGCTGATAAATCACTATTCTTCTGTTGATGAGGTGTGTAGTGTGTACTATCTGATTATATTACTGTTTTCTTG ATCCTA
• Tissue: pods
• Gene name: LI_gene_186646;
• Additional information: details;

Expression of Ll_transcript_409056

FPKM

• PAB: 0.2
• PNAB: 0.3
• PS1: 0.8
• PS2: 1
• PS3: 0.2
• PW1: 0.7
• PW2: 0.8
• PW3: 0.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_409056

• Blastp: RNA-binding KH domain-containing protein RCF3 from Arabidopsis with 59.01% of identity
• Blastx: RNA-binding KH domain-containing protein RCF3 from Arabidopsis with 58.89% of identity
• Eggnog: mRNA transport(ENOG410XNN8)
• Kegg: Link to kegg annotations (AT5G53060)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019415294.1)
• Pfam: KH domain (PF00013.28)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;