| Id Trinity | TRINITY_DN51655_c0_g1_i15 |
|---|---|
| Name Transcript | Ll_transcript_409060 |
| Sequence | TCGGAGTTTCACTGTTTGAGTTCAGTATATATATTACAAACAAATGATCAAAAGTACACAACAAATTCTTTCAGCTTTTGGCTTTTGGCTTTTTGGTCAT TCTGCTATTCAAGTCTTGCATAGATACTCTGAACTTCTCCGCAACTAAAAACCCCTTTCTTTAGGGTTTCATTGATTCTTCAATTTCCCTTTAACAAATA AACAATACTATTGCTTGGAATTGAGACTTGAGATTCAGATTCTGATTCTGTAGCACTAATTCCAATACTTCAGAATTTTCAATTTCAACTTTTAAATCAA ACTCAACTATCAATGACGGAAAGGTCTAGATCTAAGAGGAACTATTATTATGACCAAGATTATGATTCTGAAACCTTAGCTCGGACCAGACCTCGTTATA ATTACCACTATAACAATCGCCACCGTGACGCCTACGGCGGCGCCGGTGGACGCCACCTTAAGATTCACCAGGATGCGCCGGTAACGGTTACCACCAGTTA CCGCATTCTGTGCCATGATTTAAGGACCGGCGGCGTGATTGGGAAGTTTGGCAGCACCATTAAGTCAATCCGGCAGCGCACCGGCGCGTGGATCAACGTG CACGAGTTGGTCCCGGGGGACGAGGAGCGTATCATTGAGATTTCGGACATGCGCCACCGTGACCCTGAGGGGAGAATGCCATCGTTCTCACCAGCGCAGG AGGCGCTGCTCCTTATTAATGAGAGGATCCTGGAGAGTGATGCAGCGTGTAGGGTGGTGGCAGTGGAGGAGTATGGTGGTGGTGGTGGTGGGAGGAACTG GGACTGGGTAGCGACGAGGTTGGTGGTTTCGAGAATGCACGTAGGGTGTTTGTTGGGTAAAGGGGGGAAAATTATTGAACAAATGAGGATGGAAACAAGG ACTCAAATTAGGGTACTCCCTAGAGATCACAACCTACCTCGTTGTGTTTCAATGTCTGAAGAAATTGTTCAGGTTACTGGTGATGTAAATGATGTAAAGA ATGCCGTAGAAGTCATATCATCACGGTTGAGGGAGAGCCAGCATCGTGATCGAAGTCATTTCCATGGACTTGGACATTCACCAGAGAATTTTTTCTCACC TGATGATAATTATATTCCGCATGGTGGATCTCTTAGATTGTCTGTGGAGGCAGCTGCTTTTGGATCACGAGGATCTGCTACCAGTGCCAGAAACAATAAC CATCTGTCATCAGGTGCTCCTGTGGCTAATGATGCTCAGCCTTTCTATGGAGAGGACCTAGTTTTCCGTATAGTTTGTCCAGTTGAGAAAGTTGATCATA TCATTGGGGAATCAGATAGATTTGTAGAGTTTCTTCAGAGCGATGTTGGCGTTGACATTAAGGTCACTGATCCCATTGCTGGTTCAGAGGAGCGGATAAT CATCATTACTTCAGAGGAGGGTCCGGATGATGAGTTGTTCCCAGCTCAGGAAGCTTTGTTGCATATTCAAACTCGCATTGTCGATCTTGTTCTAGATAAG GAAAATATTATAACCACCAGGCTCGTCATCCCATCTAGCGATATTGAATGCTTAGATGGAAAATATTCATCACTATCGGAAATAAAGAGGTTGACTGGTG CTAATATTCAAATTCTGCCAAGAGAACAACGGCCTCTCTATGTTGCAAAGACTGACGAGTTAGTACAGATCGTAGGAGAAATAAAAGCAGCCCGAGAAGC TGTTCTTGAGGTGACATCAAGATTAAGAAGTTACTTGTATAGGGATTTCATTCAAAGGGACACAGTATCACCATCGGCCCCCTTATCTAGCATGGAGGCA TCATCTTCCAATACTACAGCTCCAGCTACTGAAACATCCACAATCTATCAGAATGCGCAAACCGTGGCAGCAACAGTTCTTCCATCAAAGATGGAAACTG GAGGATCTAGTGCTGAGACAGGAAAGCAGAAAGGAAATGAGCGGCATGATGATGTCCCAAGTGGTTTAAATAGGATCACCATGCCATCTGTTACAAGGAG CATTCTTGAAGTTGTTCTACCGGAGTATGCAGTTCCAAGGCTTATAGCAAGATCCAAAAGCAAGCTTGCACAGATAAGTGAGGTGCACGTGATTAGATCT TTCAGTCCCTTTAATATTTGAATTGTGTAAAAAACATTTTATACCAAGCAATTGGTGCCTTAAAATGTCATGCTTACTGTTATGTTGGCATCTTCCGTAT GATAACCGTAAGGAGCTTTCCCCTCTATTCCCATGAGCAAGTTAGTTCCTCTTAGAACAAGAAACACTGAACTTGTTTTTTCATGATTCATGAATTGTTC TACTTACATATTGTATCTAGATCACACTGAACTTATTAGTATTTCTTGTTTTAGCTTGAAGATTGAAAAGTAAAACCTTAGGACCTTAATAACCAAACTT TTCTTCTCAGATATAAATCTGGAAATTATTATTTTGATAACTTCCCAATCCTTGATTTTAATAGAAAGCATGTATTTCCACTTATGTTTTGATGGGAACA GTTGTCAGGAGCTAATGTAACTCTTGTAGAGGACAGACCAGATGTGATACATAAAATTGTTCAGCTATCTGGTACTCCAGAACAGGCAGAGAGAGCCCGG AGCTTGCTCCAGGGATTTATTTTGAGCACACAAGAAGATGGTCCTTAAGTGATGTTCATACCGATTGGCGATTGATGGTTCGACAACACTGTTGTGGCCT GGAGTTAGAATCTTCCATGGGAGAAGCATTCCAATGTAAAT BLAST |
| Tissue | pods |
| Gene name | LI_gene_186646; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_409060
| Blastp | RNA-binding KH domain-containing protein RCF3 from Arabidopsis with 52.6% of identity |
|---|---|
| Blastx | RNA-binding KH domain-containing protein RCF3 from Arabidopsis with 52.13% of identity |
| Eggnog | mRNA transport(ENOG410XNN8) |
| Kegg | Link to kegg annotations (AT5G53060) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019416108.1) |
| Pfam | KH domain (PF00013.28) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |