| Id Trinity | TRINITY_DN51655_c0_g1_i6 |
|---|---|
| Name Transcript | Ll_transcript_409051 |
| Sequence | TGGCTTTATAAACAAACCCAAAGTACACTGTTGGCTCATCTTTCTGCTCAACACTTTGCATATGTACTCTGCAACCAAACCCTTTTTTCTAGGGTTTCAT TCATGAACTCAGATTCACTCATTGATTCTTCAATTTCTCCATTACAATAATCATTACCATTGCTTGGAACTTTCAATTTCAACTACTTTTGAACTCAATT TGACTCTGAAATTATGGAAAGATCTAGATCTAAGAGGAACTACTACTATGACCAAGACTATGATTCTGAAACCTTAGCTCGGACCAGGCATCGCTATAAC TATCACTATTCTAACCGCCACCGTGGTGCCTCCGGTGGCGGTGGTGGACGCCATGTTAAGCCTCAGCAGGATGTGCCGGCAACGGTTACCACCAGTTACC GGATTCTGTGCCATGATTTGAGGGCCGGCGGCGTGATCGGGAAGTCCGGTAGCATTATTAAGTCAATCCGGCAGCATACCGGCGCGTGGATCAACGTGCA CGAGCTGACCCCGGGAGATGAGGAACGTATCATTGAGGTTTCGGACACGCGCCGCCGTGACCCGGAGGGGAGAATGCCGTCGTTCTCTCCGGCGCAGGAG GCGCTGCTACTTATTCATGAGAGGATTCTGGAGAGCGATGCGGCGTATAGAGTGGCGGCAGAGGAGGAGGATTATGGTGGTGGGAGGAACCGGGACCGGG CATCGACGAGGTTGGTGGTTTCGAGAATGCATGTTGGGTGTTTGTTGGGGAAAGGAGGGAAGATTATTGAACAAATGAGGATGGAAACAAAGACACAAAT TAGGATACTCCCTAGAGATCACAACCTACCTCGTTGTGTTTCAATGTCTGAAGAAATTGTTCAGGTGCAAAAACAATAACCCATAACACAAAAATGAATA AAACAAACTTGGAACTTTATTTTCTTATATCTGATGATTTCTTAAGTTGCATGCATGATCAGAACCTCAATTTCGTAGTTTCTTTATTCCGGTAAGTTAC TATGGAGGTGGTTCTTTTTGCTTCTGGATGGATGACTAATTACAGTTGCAGAACTGAAGATAATGGCTGTGGACGTTTGACTGTTATTTTTTCTCTCATA AATTAATGCAGTAGAGTTTGAACTAGCAATGATTACATGATTTTTGCTATGGTATGAATGAATATAATTTGTATTGGAGCTAGTTTACTACTTTCAGCTT GAAAGCTGGAAAAGGAGGATGTGTATTCAAGTTCAAAGCATTCCAGCTTTCAACCCGTAGATCAGAGTCCATAATTTTTTTATTGCTGGTTTTGTGCTGC ATAAGTGAAGTTGTTACCAACTTGGTTGGATCAAGTTACAGGTGATGTAAATGCTGTGAAGAATGCTCTAGAAGTGATATCATCACGGTTGAGGGAGAGC CAGCATCGTGACCGCAGCCATCTCCAAGGACGTGGACATTCACCAGATCGTTTTTTCCCACCTGATGATGATTACATTCCTCATGGTGGATCTCGTAGAT CGTCTGTGGAGGAGGCTGCTTTGGGATCACGAATATCCACTACCAATGCCAGAAACAATAACCATATGTCACCAGGTTATGCAATGGAGTCAGGGGCTGC TATTGATACTCAGCCCTTCTACGGAGAGGACCTAGTTTTCCGTATACTTTGTCCAGTTGAGAAAGTTGATCGTATCATCGGGGAATCAGATGGAATTGTA GGTTTTCTTCAGAATGAAGTTGGTGTTAATATCAAGGTCACTGATCCCATTGGTGGTTCAGAGGAGCGGATAATTATCATTACTTCAGAGGAGGGTCCGG ATGATGAGTTGTTCCCAGCTCAGGAAGCTTTGTTGCATATTCAAACTCGCATTGTCGATCTTGTTCTAGATAAGAACAATACTATAACCACCAGGCTTGT CGTCCCATCTAGCGATATTGAATGCTTAGATGGAAAAGATGCATCACTATCAGAAATAGTGAGGTCGACTGGTGCTAATATTCAAATTCTGCCTAGAGAA GAACGACCTCTCTGTGTTGCAAAGAGCGATGAGTTAGTACAGATTGTAGGAGAAATAAAAGCAGCTCGAGATGCTGTTGTTGAGGTGACATCAAGATTAA GAAGTTACTTGTATAGGGATTTCATTCAAAAGGATACAGTACCTCCAACAGCCCCCTTATCTAGCGTTGAGGCATCTTCCTCCAATACTATAGCTCCAGC TATTGAAACATCCACAACCTATCAGAATGTGCAAACTGTGGCAGCAGCAGTTCTACCATCGAAGAAGGAAACTGGAGGATCTAGCATGGAGGCAGGAAAG CAGAAAGACAATGACCGTCGGGATGATGTGCAGAGTGGTTTAAATAGGATCACCATGCCACTTGTCACAAGGAGCATTCTTGAAGTTGTTATACCGGAGT ATGCAGTTCCAAAGCTTATAGCAAGATCCAAGAGCAAGCTTGCACAGATAAGTGAGTTGTCGGGAGCGAATGTAACCCTTGTAGAGGATAGACCAGATGT GACACAGAAAATTATTCAGCTATCTGGTACTCCAGAACAGGCAGAAAGAGCCCAGAGCTTGCTCCAAGGATTTATTTTGAGCACACAAGAAGATGGCCCT TAAGTGATGGAATACCGATAGCTGGTTAGACAAAAGTGCCGTTGTTTTATTCTCTGGGGCATTTTGTTACATGCACTAATTGGTATTTCATGTGTTTACG AGACTGTTGTCGCCTAGAGTTTGGGTTTTCAATGGGAGAAGCATTCCAATGTAAATGTTGTTGTATTAAGAGAAATTTTTTTGTTAGTTGTTTTATTAGT ATTTTCAGTAAGTGTGGGGGAGCAAATGTTGGCTACCCTGCTAGACCTGTTATTTTTTGAGTAAGAAGTGGGAAGTTTTTCATGGAAGATGAATCAGAAG CTTTTTTGCCTCAATTACTAGAAGTCCTTGCATGCTTGTAGTGCATCAACTATAAATGCATGTTCCAGGAAACCCATGGGTTAAAATTGTTACAAGTTGA GTTCAGGTTTTGGAATTTGCACCTGCATGCAAATGGGGACAGACTTTTAAAACCCGGTAATTGGACGAGGCGGATACTGGTGCATCCATACTTGTGGGTA TCCGCACTGACCGTATATATATAGAGATAACTTCCCACATTTTCCCCTAACCTGTTCTCATTGTGTTGATGCTGTCACTGGAACTGAAACCCTAAACATG AGATGTGTTGAACCATGTTACTTGGTTGTTGCCATCATTGTTTAATGCTTGAAAAGTCATGCCGCCATCCACCTCGGATTGCCATCGACTTCATTGTGTT GCTGGTCGCCTGGTTGTTGCTTCCTTCAACCTTGAATTGTGAATTCTGATGCAGAACACAATTATGACCTCAAATTGCAACGCCGCACAAGATTGTAAGA GGTAAACACCTCTACACCTTGACCAATTTGTCTACTCTGCAGTGCCATTAAAATTACTTTTTTTGTTCTAGTGATTTGGAAATATGAATCTCCTTTTTTC GCTTACAGTTACACCTCTAATCTATAAGTTATCCTGCTTCTTTTAAAAAGGTTTTTTTGTTCTCTCATAATTATTTCCATCTTTATGCTGATAAATCACT ATTCTTCTGTTGATGAGGTGTGTAGTGTGTACTATCTGATTATATTACTGTTTTCTTGATCCTA BLAST |
| Tissue | pods |
| Gene name | LI_gene_186646; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_409051
| Blastp | RNA-binding KH domain-containing protein RCF3 from Arabidopsis with 55.43% of identity |
|---|---|
| Blastx | RNA-binding KH domain-containing protein RCF3 from Arabidopsis with 54.71% of identity |
| Eggnog | mRNA transport(ENOG410XNN8) |
| Kegg | Link to kegg annotations (AT5G53060) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019415294.1) |
| Pfam | KH domain (PF00013.28) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |