| Id Trinity | TRINITY_DN51674_c0_g1_i12 |
|---|---|
| Name Transcript | Ll_transcript_409129 |
| Sequence | CTTTTATCCATCTTTATATCCCGCGTGGCCGCGTCCCCTGTCCCTTCATCTTTATATCCAGCTTGCACATTCATGCATCTTGCCTTACATTGAAAATGGA GCGACAGGAAATAAACTCATCTAAAACCTGAGACTTGGAAGACTCAATATAGTCAAATCGTAAACAAGGAAATTTGAAGCATATTCAAAATGTGCTAATC TAATAATATTATAAGGTTCCATTAGAAAAAGACAGCTACGCATCAAAAGAGGATTCCTTACCATATGCAAAATAAATACCAATCTTAGTTTCATTGGTCT TTGTAATCTCCAGCTATTCACACGAAATTGAAAGAAAAAGGCACGTAACGTGACTATTCTAAGAGTGTACTATATAGCATGCAAATATAAGACACAAAAC AATTCCTCTACCATTTCTCTCTTTCTCTCAACCTTCCACCGATAATGGCTGCGTCGCCGTCACCATCCACGGCGGCCACCACCAACATCATGCTACCCAT CCACGAGAAGAAAACAAACCAAATTGATCTCTACCGTCCCCTCCGCTACTACATCGCCATCCACTACTCAGAACGCGAAGCTCAAAACCTCGAAGATGAT CTCCAAACCCTAAAACAACTCCGCTCCGATATCGAGCGAAACTCCGACCCTTCCCTCCACGCGCGCCGCGACCTCCTCCAATCCTATTACAGATCCCTCT GCCTCGTCGAAACCCGATTCCCAATCTCACCCGACCCGAACCACGTAAACACGTTAACGTTCACCTGGTTCGATTCGTTCAAACCGAAGAACAAATCATC TCAGCAGAACATTCACCTTGAGAAAGCCTCAGTGCTCTTCAATTTGGGTGCGGTTTATAGTCAAATTGGATTGTCATATGATCGGAACATGGTTGATGGT CGACGCCAGGCGTTGCACGCATTTATCGCGGCAGCGGGGTCGTTTGCTTACCTGAGGGAGAATGTGGCTTTGAAGGCATCGGGTGGAGGTTCTATCACTG CGGATTTGTCGGTAGAATGTGCGGGAATGTTGGAGAAGTTGATGTTGGCTCAGGCTCAGGAGTGTGTGTTTGAGAACACCATTGCCAAAGGGAGCACCCC CGGCGTTTGTTCTAAGATATCTAGGCAGGTAGGGCTGTACTATGAGGAAGCATTAGCTGCGCTGAATATTGCACCTTTAACCCAGCATTTTGATAAACCA TGGGTAGCTCATGTGCACTTAAAGGCAGCTCTATTCCACGCGGAAGCTTGTTATAGGTATGGATTAGAGCTACATGAAAAAGAAGAAATAGCAGAGGAGA TCACACGACTCCGGAGTGCTGTAAATGTGCTAAATGAGGCAAAGAAAAACTCAAGGGGTGCTGCAGCACAGATTCTAGATGCGATCAGCAAGTTACTGGC CAATATTAACAGAAACCTGGAGAGGGCTGTCAAGGAGAATGATAGAGTTTATCTCATGAGGATTCCATCTTTCACTTCCTTACCACCTCTTCCAGCATTT TCTATGGTGAAGCCAATGGTGATGAATGAAGTGCTAGATGCAAGCAAAGAGAAGATGTTTGCAAGTCTTGTTCCTGACAGCAGTACAAAGGCCCTCTCCA GATACACAGAAATGGTAGATGAAGTTATAAGAACACAGGCTGAGAAGTTACAGCAAGCTAGTGAGCTAACCCGAGTTAGGCTTAAGGAAATGGGACTGCC AGATTCTATTCTTGCTTTGGAAGGAAATTTTTCTCTACCAACAAATCTCAAAGAAGATGTGGAGGCTGTGCAGATCAGTGGGGGTCCTGCCGGTTTGGAT GCAGAGTTGCAGCAACTTAAGGATCTAAGGAGGGTGAATCAAGAATTGCTGGTCCAGATTGAGGAGTTGTTGCAGAAGGAAGCGAGAGAGGATTCTCAAT TTAGGAGCCAATTCGGGACAAGATGGACTAGGCCACAATCAAGCACTTTGACGAAGACCTTGCAGGATAGGTTAAACAGGTTTGCAGGTAACTTGAAACA AGCTGCTGAAAGTGATGCTAGGATTGAGCGTTCAGTTAGAGAACATTCAGCACTCATGTTGATCCTTGATGCTCATCCGATTGAATCTGCTCTTCCAACC TTGGCAAGACCAATTATGTCTTTTGATCAAAATGAAGATGCTGTTGTGGGGTCTCTCAAGCAGAGCTTGAGGCAACTAGAAAATTTGGGAGCTCAAAGGG CTGGTCTTGAAGACATGCTTAAAGAGATGAAAAGAAAGGATGACATACTACCCAAGTTGATGACATTCACTGGTTCTCATGAGGATCTTTTCAAAAAGGA GATTTCAAAATATGATCATATTTGTGAAGAAATAGCTCAAAATATTGAGGCACAAGAGCAGCTGTTGCTGCAGATCCAGGCTCAAAATGATGATTTCTCT GTTATCTTCAACCTTGAAGATTACAAAGTTTCATGTGAAAAATCATACAAGCAGATTGAATCTGCTGTAGCAAAGTTTCAAGAAATAAAGGAGAACATCA ACGAAGGGTTAAAATTCTATGTTACTCTGCAGGATGCAATCACAAATGTAAAGCAGCAGAGTGACGACTTTGTAATGACAAGGAACATCCAGTGTAGGGA AATGATTGATGATGTTCAGAGACAAGTAGCTGGTCTGAGTTTCCAGGATAACAAAAACACAGGTGCTTTTAACAGCAACTACCCTTCAGTGGGAAACCAA AACCAAAGATCCAATGCACAACCAACAGAATCCCGTCCTCAAACTCCTTATTATCAGTCAGCTGAGCAACCGCAAGTTCCTGCCTTTCCTCATCCCCCTC CCCCATATGGTCATCCACATCAGCCGCCACCTCCATACCACCTTCCATCAACATCATCTGCTCCATACCCACCTTCTCAAGTCCATCAGCAGCCACTGGC AAACCATGACTACGGCCAGCCTGCATATCCTGGGTGGCGTGGTCCATACTATAATAATGCACAGGCTCAACAACCTGGGTCTGCTCCTCGTCCTCCTTAC ACCGTTTCATCTCCATACCCTCCTCCTCACCAAAGTGGCTACTATAGGCAGCAATAGTGTTCATAGAATCATATCCCCTAGGGTTGAAAATGCTAAGTGT TCATACAATCATGGTGTGAAAATGTTTTTGTTTCTTTGGGTTGTCATTGTACTTCTTTTTCTGATGGTTTGCATTATAATTGGATTGTGAATAAGTACAG CTTCTACAACAATGTTGCATGTATCGTTTGATGAACTATACTGTACGAGGGAAATTCTCCCAACTATAAATACTCACTCCAGGGAAGTTAAAGCAAGCAC AACTAGATTTCCAAAGTTTTCTTTAGTGATTACATTATGTTCATCCATAGTCACTAATTACAGGTCTGCTACCTTATATTTAAAGAGCTTTGATATAGTA GACATATTGATGTGA BLAST |
| Tissue | pods |
| Gene name | LI_gene_186783; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_409129
| Blastp | Vacuolar-sorting protein BRO1 from Arabidopsis with 69.51% of identity |
|---|---|
| Blastx | ALG-2 interacting protein X from Dictyostelium with 29.06% of identity |
| Eggnog | Rhophilin, Rho GTPase binding protein(ENOG410XQX6) |
| Kegg | Link to kegg annotations (AT1G15130) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019428016.1) |
| Pfam | BRO1-like domain (PF03097.17) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |