| Id Trinity | TRINITY_DN51674_c0_g1_i22 |
|---|---|
| Name Transcript | Ll_transcript_409139 |
| Sequence | CTTTTATCCATCTTTATATCCCGCGTGGCCGCGTCCCCTGTCCCTTCATCTTTATATCCAGCTTGCACATTCATGCATCTTGCCTTACATTGAAAATGGA GCGACAGGAAATAAACTCATCTAAAACCTGAGACTTGGAAGACTCAATATAGTCAAATCGTAAACAAGGAAATTTGAAGCATATTCAAAATGTGCTAATC TAATAATATTATAAGGTTCCATTAGAAAAAGACAGCTACGCATCAAAAGAGGATTCCTTACCATATGCAAAATAAATACCAATCTTAGTTTCATTGGTCT TTGTAATCTCCAGCTATTCACACGAAATTGAAAGAAAAAGGCACGTAACGTGACTATTCTAAGAGTGTACTATATAGCATGCAAATATAAGACACAAAAC AATTCCTCTACCATTTCTCTCTTTCTCTCAACCTTCCACCGATAATGGCTGCGTCGCCGTCACCATCCACGGCGGCCACCACCAACATCATGCTACCCAT CCACGAGAAGAAAACAAACCAAATTGATCTCTACCGTCCCCTCCGCTACTACATCGCCATCCACTACTCAGAACGCGAAGCTCAAAACCTCGAAGATGAT CTCCAAACCCTAAAACAACTCCGCTCCGATATCGAGCGAAACTCCGACCCTTCCCTCCACGCGCGCCGCGACCTCCTCCAATCCTATTACAGATCCCTCT GCCTCGTCGAAACCCGATTCCCAATCTCACCCGACCCGAACCACGTAAACACGTTAACGTTCACCTGGTTCGATTCGTTCAAACCGAAGAACAAATCATC TCAGCAGAACATTCACCTTGAGAAAGCCTCAGTGCTCTTCAATTTGGGTGCGGTTTATAGTCAAATTGGATTGTCATATGATCGGAACATGGTTGATGGT CGACGCCAGGCGTTGCACGCATTTATCGCGGCAGCGGGGTCGTTTGCTTACCTGAGGGAGAATGTGGCTTTGAAGGCATCGGGTGGAGGTTCTATCACTG CGGATTTGTCGGTAGAATGTGCGGGAATGTTGGAGAAGTTGATGTTGGCTCAGGCTCAGGAGTGTGTGTTTGAGAACACCATTGCCAAAGGGAGCACCCC CGGCGTTTGTTCTAAGATATCTAGGCAGGTATAGTGCTTTGATGCTGAATTAGTCACTCATTTGCTTTGAATCCTGGATTTTTAAGAGTGCATGTTCATT CTATAGTAAAGGCTCAAACTGGTATATAAAAGCAACCTTTAGTCGTTAAAAAACTAACAATTTCTCGTGACCAAAGGTTTACCCGTATTTTTTTTAAATT TTAAATATGAAATATGAAGTGTGAGCATGGAACGTTTTGTATGTGATTAGTGCTTTGCTAATTGTCAATTCTGATAGCTGCTCTGTTGTCTATCTTGTGG CTTGCATTTGTGACGATGTAGGTAGGGCTGTACTATGAGGAAGCATTAGCTGCGCTGAATATTGCACCTTTAACCCAGCATTTTGATAAACCATGGGTAG CTCATGTGCACTTAAAGGCAGCTCTATTCCACGCGGAAGCTTGTTATAGGTATGGATTAGAGCTACATGAAAAAGAAGAAATAGCAGAGGAGATCACACG ACTCCGGAGTGCTGTAAATGTGCTAAATGAGGCAAAGAAAAACTCAAGGGGTGCTGCAGCACAGATTCTAGATGCGATCAGCAAGTTACTGGCCAATATT AACAGAAACCTGGAGAGGGCTGTCAAGGAGAATGATAGAGTTTATCTCATGAGGATTCCATCTTTCACTTCCTTACCACCTCTTCCAGCATTTTCTATGG TGAAGCCAATGGTGATGAATGAAGTGCTAGATGCAAGCAAAGAGAAGATGTTTGCAAGTCTTGTTCCTGACAGCAGTACAAAGGCCCTCTCCAGATACAC AGAAATGGTAGACAACGTTATAAGAACACAGACTGACAAGTTACAGCAAGCTAGTGAGCTAACCCGAGTTAGGCTTAAGGAAATGGAACTGCCAGATTCT ATTCTTGCTTTGGAAGGAAAATTTTCTCTACCAACAAATCTCAAAGAAGATTTGGAAGCTGTGCAGGTCAGTGGGGGTCCTGCCGGTTTGGACGCAGATT TGCATCAACTCAAGGACCTAAGGAGGGTGAATCACGAATTGATTATCCAGACTGAGGAGTTGTTGCAGAAGGAAGCAAGAGAGGATTCTCAATCTAGAAT CCAATTTGGATCAAAGTGGACTAGGCCACAATCAAGCACTTTGACGAAGACCTTGCAGGATAGGTTAAACAGGTTTGCAGGTAACTTGAAACAAGCTGCT GAAAGTGATGCTCGAATTGAGCGTTCAGTTAGAGAACATTCAGCACTCCTGTCAATCCTTGATGCCCGCCCAATTGAATCTGCTCTTCCAACCTTGGCAA GACCAATTATGTCTTTTGATCAAAATGAAGATGCTATTGTGGGCTCTCTCAAGCATAGCTTGAGGCAACTAGAAACTCTGGGAGCTGAAAGGGCTGGTCT TGAAGACATGCTTAAAGAGATGAAAAGAAAGGATGATATACTGCCCAAGTTGATGACATTCTCTGGTTCTCATGAGGATCTTTTCAAAAAGGAGATATCG AAATATGATCATATTTGTGAAGAAATAGGTCAAAATATTGAGGCACAAGAGCAGTTGTTAGTGCACATCCAGGTTCAAAATCATGATTTCTCTGTTATCT TCAATCTTGACGATTACAAAGTTTCACGTGAAAAATCATACAAGCAGATTGAAGCTGCTATCACAATGTTTCGAGAAATAAAGGACAACATCAACGAAGG GTTAAAATTCTATCGTACTCTGCAGGACGCAATCATAAATGTAAAGCAGCAGACCAATGACTTTGTAATGACAAGGAACATCCAGTGCAGGGAAATGCTT GAAGGAGTTCAGAGACAAGTAGCTGGTCTGAGTTTCCAGGATAACAAAAACACAGGTGCTTATAACAGCAACTACACTTCGATGGGAAATCAAAACCAAA GATCCAATGCACAACCAACCGATTCTCGCCCTCAAACACCTTATTATCAGTCATCTGAGCAGCCACCGGGTCCTGCGTATGTTCATCCCCCTTCCCCATA TGGTCATGCCCATCAGCCTCCTCCATACAACATTCCATCAACGTCAACTATTCCATACTCACCTCCTCAGGCCCATCAACAGCCACCGGCAAACCATGAA TATGGCCAGCCGGCATATCCTGGTTGGCCTGCTCCACCATACTATAATAATACACAAACTCAACAGCCTGGGTCTGTTCCGCGTCCTCCTTATACCATTC CATCTCCATACCCTCCACCTCACCAAAGTGGCTTCTATAGGCAGCAATAGTGTTCATACAATCATATCCTCTAGGATATAGGTAATATTCTTTCTGTTGT CAGTATCTCTTGAAGAGTTGGGATTATCGAGCCATTTATCTTAAAGCCTTATCGGAGCGTGAAGCATTTTGTTTCCTTTGGTTGTCATTGTACTTGTTTT TCTATTGATTTGCATTATAATTGGATTGTGAATAAGTTTAGCTTGTACAACAATGCTGTATGTAAAGTTTGATGATACATTAAAAGGAAATTAGACAAGC TCAGGAGCTAGATATTCTAAGTCTTTTTTTAGTGTTTACATTATGTTGATTGAATACGAACGTCTACTACTAAATTTAAAAGAGGTTTGATCATGTAGAC GTGTGGTTGATTAGTTTTAAGGTCAAAGTAAATCACAGTAATAATGCTAATCAAACTTTACTTGAAAAC BLAST |
| Tissue | pods |
| Gene name | LI_gene_186783; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_409139
| Blastp | Vacuolar-sorting protein BRO1 from Arabidopsis with 65.79% of identity |
|---|---|
| Blastx | Vacuolar-sorting protein BRO1 from Arabidopsis with 71.53% of identity |
| Eggnog | Rhophilin, Rho GTPase binding protein(ENOG410XQX6) |
| Kegg | Link to kegg annotations (AT1G15130) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019428016.1) |
| Pfam | ALIX V-shaped domain binding to HIV (PF13949.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |