| Id Trinity | TRINITY_DN51685_c1_g2_i3 |
|---|---|
| Name Transcript | Ll_transcript_408409 |
| Sequence | CTCAAGAATGTGCGGTTCAACTCCCAAACAGCATTGAAAATACCTATTCTTTGAATTAATTATTACTTTTTCATAAGATGAGTCAAATGTTCCAATTGGT GAAGATATATTCTTTTTTAATAACTTTTCATATGTAAAAATTTCATTCATTTTCACCCATTTCAAAAAATATCTCTCCTTAAACCTCGTTCATGGACTAT TTTTTCTCTTTCAACATCACTCTTCACTATTTCAACCTCCACTTTTCATCATTTTCCCCCAAATTTTCATTCTTTCTCCGTTCTCTATGTTGATGTCTCT TTCTCCAAGCTAATTTAGCTTTTGGGTCTTCTTAATTTGTCGATATAACCAATTTTTCTACACTTTCTCTTAGATTCAGGAACTTAGTTGAGATGAAAGC TACTTTGATTTGAGGGTATGCAAACTATCTTAAGTGCAAAAGCAGATAGTGAATACTTGAATTCCCGAAAGACATGCTTTCAGCTTTTTTTCATCTGAAA TGAAGAACTTGCAGAACACAGACGAATTACAGTCATCAACTCAAGCTTCTAATGAGCCGAAGAGTGAACCACCAAACAATCACACAACAGATGCTCCTAC GACAGACTCAGGTTCCGCATCTGCCTCAAGCAACGATAGTAAAAAAGTTTCACGGCAGGATATTGAGCTTGTCCAAAATTTAATCGAAAGGTGCCTACAA TTATATATGAACAAAGATGAAGTGGTTAAAACACTACTAACTCGGGCAAAGATAGATCCTGGATTTACAACTCTGGTATGGCAGAAGCTGGAAGAAGAGA ATGATGATTTCTTCAGGGCCTACTATATCAGGCTAAAATTGAAAAAGCAAATACTTTTATTCAATCATTTGCTTGAGCATCAATATCATTTGATGAAGTA TCCCATGCCCGCTAAGGTTCCATTAGCTCCTATACCAAATGGAATCCATCCGATGCCTGTCAACAACCTACCAATGGGATACCCAGTGTTACAGCAGCAA CCCATGCCAGCAGCAGGTCAGCCTCATCATATTGACTCCATGGGTTGCAATATATCAATGGGTCACGTGGTTAATGGAGTCCCTGCACCTAGCAATTTTC ATCCCATTCGGATGAATTCTGGCAATGATATGCTGGTGGACCACAGTGCTCCTGATATGGCTCCTATCATTTCACCAAATAGTGGAATGTCATCCATGTC AGATATGCCAGTGAGTCCGACATCAGTAGCACCCAGTGGCCATTTCCCCTTCACTGCATCAGAAATACCAGGAATGGGGGCAGACGTATCAGCTCTTGAT GCTGCATTTGCATCTGATGTGGTAAGTTCAGTAGGACTACAGCTTGCACCGGATGGCGGCAATGGCATTTCCAGATCGCTAGATCAAATTCCGTGGAATT TCAGCCTATCTGATCTAGCAGCAGATTTGCCAAACTTAGGAGATCTAGGAGCTCTGGGAAATTATCCTGGTTCACCATTTTTGCCATCTGATTCAGACAT TTTACTTGAATCTCCAGATCAACATGATATAGGTAATGTTTTTGGTTTCAGGATATGAAATTACACACACACACACATATATCCTTGCAACCACCATATT CTACCGTTACTAACTAGAAGTGCGACCTAGTGCACGAGGCTCCCACCTAGGTAGATATGTATGCAGCCTTATCTCGGCAAATGGATAGGCTATTATTTTT TATAGGTCCTAAATATTAATATTATTGATGAAATTGTAGTGACCCAACATTTACATCTACAATATATAGAACATTCAATATAACTGCTACAAAGCCTGGT TTAACAAAGATAGCTCTTTTTTTTTATTTCAGTGGATGACTTCTTTGTTAATTTAGAGCCCCCATGCTCCCAATCAGATGAGGAGAAATCTTAAGTTAAG GTGAGGCAATGTGTGTTTCACACTGAAATTGTTAAGTTAGGAAAGATTAGGATATTAATATATGCCACCTAGCTTACATGGCATAAATGCTTACTATTAC TTTAAGTGTAGGCTGATTGATCTATCTCATCAGCATGAAGATAGAACATGTGCATTGTTGCCAGTAACTGTAATCTTTTGTATTCTTTTAAGATATGTTT TATCAGGATATAATTGCTTAGATCCTTTTCAGTGCCAAGGTTGATGTGATTTCTACTGCAACGTTTCACATTATATATAATGAAGCAACACTTTATCCAA TTTTACCCATGGAGTAGTATATTTACCCAATGTTAAAGGCTTTATATCTTTGCATCTAGTTAAACCTTGAATTTAATCTCAGCACCCAGTATTAGCAATA TATGCATGTGTATGCATTGAAAGGAGTTTAAATATTAAGTACCAGAATAAGAAGTCACTGGTATGTATCTCTCTAGCTGAGTTATTGCTTTTACATTTCC TTGTAAGGGTAAAAATATCATTATATTTGTATCTAAAAGATAAAAGTGTCACAATGCCATTTTTTTGCTTTTACTTTTGATGCACGATCTTCCTTTACCC TTTTAACATTGGGTTCATATTGTACCTTATGCATTTTGTGTATAAAAACTGTTCAATTTGGAAATGCATAGATATAGAAAGTCTATCATGATCTACCTTA AATCAATAATGTATTTGTCTAAAGAATGGTTGCACATAAATACTGATAATATTCTATCTCGAAACTAATTGTCAACAAGAGAAGTAGCGCAATAGATATT TAAACCATTCATGAAACAATGAGGTAGACAATATGAAAATTAGTTCCTCTATAAAAAAGATAGTAATAAGCATGTTCCTTAATGAATCAAGGGTCACTGG TTATAACATGAACAATAGAATGAGAGGGAGGGTTGCGGCAAACTGGGCATGTTGTGTTCATGTGAAGCCACTTATCAATGCATTCAACATGAAAACAATG TTTACATTCAGGAATGCATCTGATTGTCTCTTTGGTTTTGTACTCTGATAAGCATATCCAGCATGATACATCATTCGGTCCCGGAACCCGTTGACTCTCC CCAAGTACTAGTTTCTCAAAAGATTCAATGATAGATTCATCCAGACCTGTAGAACCAGTAATAGTAGTATGTTGTGGTCCTATTGCAGCTTGTGCAGAAC TCTGGAAAGCAGCATCGGCTATTCTGACCTTGTAGCACATGCAGCATACTATGACAATAACACATAATGCAGCTGGTGCAACTATAGTTACTGTGATGGT TCTCAATGTTATCAGTCCACGTTGTGATCTGCCTGAAAATTGAAGACAATATATGAGATTATATACTTTTTTTTATAGGCAAATGTTAGTATTTGTTCCG GGTTCAGAGTCCTTTATTTTATTATTTGTATGGCTATGGAATCTGTAAGGGTGATAAATGGGACGATAAACTTCATCAATTGAAGCAAAGCAAGATAGTT GACAGATGCTACCAAATTTACTATGATTCAGCCAGAGAAGCAACATAAGAGAATGAGGAAGTAATATTAACTAAAGTTATGTTTGGTTTAATTGTATTAA TATCTCTTTTGTTTCAAATTTCACATAAATCTCATTTCAGTTTTATGCTATTATTAT BLAST |
| Tissue | pods |
| Gene name | LI_gene_186875; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_408409
| Blastp | - |
|---|---|
| Blastx | Putative RING-H2 finger protein ATL21A from Arabidopsis with 52.5% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019456789.1) |
| Pfam | Plant protein 1589 of unknown function (A_thal_3526) (PF09713.9) |
| Rfam | - |
| GO | - |