| Id Trinity | TRINITY_DN51685_c1_g4_i1 |
|---|---|
| Name Transcript | Ll_transcript_408410 |
| Sequence | ATGTAATTTGATATATAAAATAATATATGTAAATAATTTTGTTAATCATTTATTTATATATATATATATATATGATGAAAAATTCATATAATCTTTGATA ATAATCATTATTACAAGAGTGATATAAATAACTAGCCAAAATAATTGGAAAAGAAGATTAAATATTAATAGGTAAGTTATTAGAAGAAAATAGATTATAA AAAAGTTGTGATTACATTATAGACAATATGTGGTTTACCCTAAATATTGATGGAGTGAGGGGGTCCCACCGAGGCAGCAGTGGAGTTGTTATAAATGAAA TCCATCCGCGCCACGCGTCCCGTGAGATGCGTTTATGTGCTGGCTTGGCTTCTCACTGCTCATTCATTCATTCATATCTCGCACTCAAAGGAGAAAAGAA AAATGTGGAAGCTGAAGATAGCGGAGGGAGGGAGTCCATGGCTACGGACATTGAACAATCACGTTGGAAGACAAGTGTGGGAGTTCGATCCTGATCACGT TGGATCTCCACAACTACTCAATGATATTCAAACTGCTCGCACTCTTTTCCACAACAATCGCTTCTCCCACCCTCACAGCTCTGATCTCCTTATGCGCCTT CAGTTTGCAAAAGATAACCCTTTAAGAGGTGATCAAGTGTTGCCTAATGTTAAAGTTGAAGATATTGATGATGTAACTGAAGAGGCTGTCACAACAACCT TGAAAAGAGCCTTGAATTTCTATTCAACTCTCCAGAGTGACGATGGTCACTGGCCTGGTGATTACGGTGGTCCCATGTTTCTTATGCCTGGATTGATTAT TACTCTCTCTGTCACTGCTGCACTCAATGCTGTCTTAACCCAACATCATATCAAAGAGATGTGTCGCTATCTCTATAATCATCAGAATAAGGATGGTGGC TGGGGTTTGCATATTGAAGGTCCCAGCACCATGTTCGGCTCCGTATTGAATTACGTCACTTTGAGATTGCTTGGTCAGGGACCTAATGATGGACAAGGGG AAATGGAGAAGGCACGTGACTGGATTCTAAGCCATGGTGGTGCTACTAACATTACTTCATGGGGCAAGATGTGGCTTTCAGTGCTTGGAGTATTTGAATG GTCTGGAAATAATCCCTTGCCCCCCGAGATATGGCTCCTTCCATACATGCTTCCATTCCATCCAGGAAGGATGTGGTGTCACTGCCGAATGGTCTATTTG CCAATGTGCTACTTATATGGAAAGAGGTTTGTTGGTCCGATCACACCAACAATATTATCTCTCAGAAAAGAGCTTTATACTGTACCATATCATGATATAG ACTGGAATGAAGCTCGCAATTTGTGTGCTAAGGAGGACTTGTACTATCCTCACCCATTCGTGCAGGATGTTCTTTGGGCATCTCTACACAAGGTTGTTGA GCCTGTTTTGATGCATTGGCCTGGCAAAAAGTTGAGAGAAAAGGCTATTAAGGTTGCAATTGAGCATATTCATTATGAAGATGAGAATACTCGTTATATT TGCATAGGTCCTGTAAACAAGGTTTTAAACATGCTTTGCTGTTGGGTTGAAGATCCGAATTCAGAGGCCTTCAAGTTGCACCTTCCAAGAATCTACGATT ATCTATGGCTTGCTGAAGATGGCATGAAAATGCAGGGCTATAATGGAAGTCAACTATGGGATACTTCATTCGTTATCCAAGCATTTATTTCAACTAACCT CATTGAAGAATATGGCCCAACTCTAAGGAAAGCTCATATGTTCCTTAAGAATTCACAGGTGACTTTTTACGTCTTATTGTCATAAGATGCATTGGTTTGC CCGTTTTGATCAGAATCTGTTCTCTTTTTTCATGAAAGGTTTTAGAAGATTGTCCAGGTGATCTTAATAGTTGGTATCGTCACATTTCAAAAGGCGCTTG GCCTTTTTCGACTGCAGATCACGGATGGCCGATTTCTGACTGCACAGCTGAAGGACTGAAAGCTGCTCTATCACTATCCAAAATTTCACCAGTGATTGTT GGTGAACCATTGGATGCAAAGCAATTTTATGATGCTGTTAATGTCATTCTCTCATTACAGAATACAGATGGAGGCTTTGCAACATATGAGCTCACACGAT CTTATAGCTGGTTGGAGTTAATCAATCCTGCTGAAACTTTTGGTGACATCGTTATTGATTATCCTTACGTGGAATGTACCTCGGCAGCGATTCAAGCTTT GGCATCATTTCAGAAATTATATCCTGGGCATCGTCGAGAAGAAATAGCATGTTGTATTAAAAAAGCTGTTGCCTTTATTGAAAAAATACAAGCTTCAGAT GGTTCATGGTATGGTTCTTGGGGGGTTTGCTTCACCTATGGCACTTGGTTTGGGATAAAAGGGCTGATCGCTGCTGGAAAGAGTTTCAGTAATTGCTCAA GCATCCGCCGAGGATGTGATTTTCTACTGTCTAAGCAGCTCCCCTCTGGTGGCTGGGGAGAAAGTTATCTGTCTTGTCAAAACAAGGTTAAGTTTGCTGT TTCTATTATCCATATCATATCACTAAATTCTGAAAAACCCAGAATCACTTCGCACTTCTTCATTTGTTATTCTTTGGAACATAATTTGTATGTGATCATT TCTCTGGAATGCATAAAAATGATTGCTAATATTCAAAGCACATTGATAGGAATGAGTTGGAGTGTTCTAAAGGATAGTTACCTAAATCAAGAAATCAACA TCTTTGCATCAATGATATTGCAAGAACATGAATCCGATAAAGAGTTCAACCAAACTATAAAATAAATAGAATAAGAGGATTCAGCATTTCACAAAGCTTT TATTTTACATAGTAAGGGAAATGCAGTATCATCACAAATTTTCTGCACAAGGAACAAGTTTCATATATTTTCCCCAAGAGGGATGAAATAATGTATGTTA GCTGTTCTTCAGGTGTATTCAAATCTGGAAGGCAACAGGTCACATGCAGTAAACACCGCATGGGCTATGCTAGCTCTCATTGGTGCTGAACAGGCCACGA GAGATCCAACACCATTGCACCGTGCAGCTGTATGTTTGATAAATTCCCAAATGGAGAATGGTGACTTTCCACAACAGGAAATAATGGGAGTGTTCAACAA GAATTGCATGATAACTTATGCTGCATACAGAAACATATTCCCCATATGGGCTTTGGGAGAATATAGATGTCATGTGTTGCAGAAGCAGGCTTCCTCTTAA TCTCAATCATTCCTATTCATCCTTCACTCTTAGAGAATGCTTATATAACTTCTTTTCTACTAGACTACTACTACTACTTCTTTTCTACTAGACTACTACT ACTACTTCTTTTCCTTGGTTCGGATCATTGGTGAAATAAGTATGTAAACCGTGGATATGTTATGTTATTCACCCTTGTCACCTCTATATCTAAATAGGAC TCTTTATCTTTAAACACAAACTTTTTTCACTGTTTATCTAAAAGCACAACAAAATATTCTGATCCCAAAGCCTGTTATGGTACCAAGGCTTTAAATAAGC CAAGAGGAGTGTATTTAAATAGTAGAATATAAATATTAATATATGAATGATTAAGTAATTCGGCTTGTAAGGTTTAATAAGCCTTTTAAATATTTAAAGT BLAST |
| Tissue | pods |
| Gene name | LI_gene_186877; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_408410
| Blastp | Cycloartenol synthase from Glycyrrhiza with 84.33% of identity |
|---|---|
| Blastx | Cycloartenol synthase from Glycyrrhiza with 84.33% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019458558.1) |
| Pfam | Squalene-hopene cyclase C-terminal domain (PF13243.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |