Ll_transcript_296274

• Id Trinity: TRINITY_DN51700_c0_g1_i2
• Name Transcript: Ll_transcript_296274
• Sequence: CTAGGATTTGATTCACCCACAGTAATGTTGCCACCTGAATTCATCTTTTTCTGCTAATACAAACAACTCTTCTCATTCTTCATTGCAACAACCCATGACA CTGTTCCAATATGGATGAGTTGAGATCAGAGATTAACGTAGATAATGATGCTGCACAAGAACCCAAGTCCAAACATAACCATGCAGATGAAAAAGATTAT TTTTTTAAGCAGAAGCGTGGTAGAAAAAGAAAAACTTACAACAAAGATGAAAAAGCTAGTGATGGTGAATCTGAAATGCCTTCACAAAGAACCACTCAGA GACGTAGTTTAAGAAATCCTCATAGACCCAGTAATGAAAATGAGATACCAAAAGTGAAGAGAACTGTTAAATTTACTGAAGAGGAGTGCTTAATGTGCCA TCAATGTCAGAGAAATGATAAAGGAGAGGTTGTGAGGTGCACAAGTTGTAAGCGCAAAAGATATTGCTTGTTCTGTTTAAAAAATTGGTATCCTGAATGG AAAAATGATGATGTTGCCGAGGCATGCCCTGTGTGCCGTGGTAATTGCAATTGCAAAGCATGCTTGCGGTCCAATGAACTTATTAAGAAAATGAAGAAAG GGGTGGAAGAGAAGAGGTACGAAGGTAATGAAGTTGAGCTCTCCAAGTATTTGCTGATACGACTTCTTCCATTTGTAAGACAGTTGAATGAAGAACAAAT GCTTGAGTTGGGTATAGAAGCTAAGAGACAAGGGCTCTCACTCTCAGAGCTAAATATCGAAAAGGCCGAGTACTCACAAATGGAGCGTGTCTACTGTGAC AACTGCAAAACATCAATATTTGATTACCACAGAAGTTGTAGAAAATGCTCTTTTGACCTCTGTCTTACCTGTTGCCACGAGCTTCGTGATGGTCAGCTTC GAGGTGGTGCGGATCCCGTTGAATTGGAGTTTATCAAATGTAGTCTTGAGTATCTGCATGGTGCAAAAGAAAAGAAAAAGGAGTCTGAGATACATGAATT ACCTGCTGATGCTGAGCCAAACAATCGCGGATGGTCAAGATCTGAGTGGCGTGCAGAACGTGATGGTAGCATTCACTGTCCGAAGGTCAATGATGAATGT TGCCGTAGTTTTCTTGAATTGAAAAGCATATTTGGTCAAGCTTTTATTTCAGAGTTGGTCTATAAGGCAGAAGAACTAGCGAAAGCATATAAGCTTGAAG ATACTATTGAGACTCCTGACAATTGGTGTTCTTGTCCAAAGATCAGTAGAAACACAGATGTTAGAAATAATATGAGGAAGGCGGCTTCTCGTGAAGAATC CACTGACAACTGGTTATACTGTCCCGTTGCTGACGATTTACGACCGTTCGATTTAAAGCATTTTCAATGGCATTGGAACAAAGGGGAGCCTGTCATTGTT AGCAATGTGCTTGAATGTACATCTGGTTTAAGCTGGGAACCACTAGTGATGTGGCGTGCTTTCCGTCAGATAACTAATACCAAGAATGGTCAACATTTGG ATGTGAAGGTCATAGATTGCTTAGATTGGTGTGAGGGAGAGATCAATATCCATCAATTCTTTACCGGGTATACAAATGGTCGTTACGATTGGCTTAATTG GCCTCAGATATTGAAATTGAAAGATTGGCCTCCTTCAAACTTATTCGAGGAACGCTTACCTCGTCATTGTGCCGAGTTCATATCTTCCTTGCCCTATAAA GAATATACAGATCCTCTTAAAGGCGCTCTTAACCTCTCTGTGAAGTTGCCTCGTAAATGTTTGAAGCCAGACATGGGACCAAAGACATATATTGCTTATG GAGTTGCTCAGGAGCTTGGACGTGGTGATTCTGTGACTAAGCTTCACTGTGATATGTCTGATGCAGTAAATGTATTGACTCATATTGCCGATGTGGAATT GAAGCATAAAAGTATCCTTGCCATTGATAAATTGAAGCTAAAGCATCTTGAACAAGACAAGAGGGAGCTATTTCGAGATGATCAGGAGGGAGAAACTAAT GTTGGGATGCCTACTAGTTCATCCTCTACTGTAGATTGTCTTTCAAATGGGTCAGAGTTGGAAGATGTTGAGAAAGTCAAAATGAAACATGAAAACATTA TGTCAATTGGGGATGATGCTTCAGATGGTGCTCTATGGGATATTTTTCGGAGGCAGGATGTACCTAAATTGCAGGAATATCTGAAGAAGCATTTTAGAGA GTTTAGGCATGTGCACTGCCGTCCTTTAAATCAGGTTATTCACCCCATCCATGACCAAACCATGTATCTGACGGAGGAGCATAAGAAGAAGCTAAAGGAG GAGTATGGGATTGAACCATGGACTTTTATTCAGAAGCTAGGAGATGCTGTTTTTATTCCCACTGGCTGTCCTCACCAAGTCAGAAATCTGAAGTCATGCA TTAAGGTTGCACTTGATTTTGTCTCTCCTGAAAATGTTGGTGAGTGTTTCCACTTGACAGAGGAATTCCGCACACTCCCGATAAATCACAAATCTTCCGA GGACAAATTGGAGGTGAAGAAAATGACAGTGTATGCTATGGATACTGTGGTTAAAAACTTGGAGAAAACAAGGTCTGGGGAAACCTAGGTTTCCAAGGTA AATGTATCCATAACATATTGAAGCTGATTTGAAGTGTTTTTTTGAGCCATTATATTGATGAGGTGTGATAATCTTAGATTATGTAATGCCCTAACTGTAG AACAGCTTTTTATTTTGTTTTCTGTAACACTGTTGTATGATGTACTTTTTAAACATCACATTACTGACATGTAATGGTGTGCATATATGTATCACCAGTG GTATATCTTGCATTTTTATGCTTAATCAAGTTTACGGTCAGATGCTAATGTGAGCATCATACTTTTAGAACTTCAGAGTGCTTAGATAATGAGATCTCTT AAGTTGCCCTTGTTTAATTATATTTTGCAAAATTTGGTGTTGATGTTGATGTCATGACCTATATAGTTTCTGCCACTAAAACTTTCTGAATGAG
• Tissue: pods
• Gene name: LI_gene_186999;
• Additional information: details;

Expression of Ll_transcript_296274

FPKM

• PAB: 0
• PNAB: 0
• PS1: 0.7
• PS2: 8.2
• PS3: 5.1
• PW1: 0.1
• PW2: 0.2
• PW3: 0.6

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_296274

• Blastp: Lysine-specific demethylase JMJ25 from Arabidopsis with 45.12% of identity
• Blastx: Lysine-specific demethylase JMJ25 from Arabidopsis with 44.94% of identity
• Eggnog: lysine (K)-specific demethylase(ENOG410XTAA)
• Kegg: Link to kegg annotations (AT3G07610)
• CantataDB: Link to cantataDB annotations (CNT0001036)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019452598.1)
• Pfam: Zinc-finger domain of monoamine-oxidase A repressor R1 (PF10497.8)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;