Ll_transcript_296296

• Id Trinity: TRINITY_DN51700_c0_g1_i22
• Name Transcript: Ll_transcript_296296
• Sequence: TAATAATATCTAATTATCTATATATGCATATAAAAAACCCAATCCAAAGAAACAAAACGAGGTTCTAGGGTTCCTTCACTCACGTGATTCTCATTCATCG TTTGATTCACATTCTCATTCCTCTTCTCTGCTGATACAAACAAACCATTCTTGTTCCTATGGAGGCGAATCATTCTCTTCAAGAGAACTCGCAACCGTTC GATTTGAACTCTCAGAAACAAGAAGATGACACTGTTATCCACAACGGTGACGGTTCTGCTTCTGGAGTGTTGGAAATCAAAGAATGTGATTTAAAGGCAC AAGATTGTTCCGATCAAGTTGTGAAAAAGAAGCGCGGAAGAAAATCTAGAGCGGAGGCCGAAGCGTTGAGGTTGAAGAATAAGGTAGATGATGATAAGGT AGCTGTTTCTGTTATCGAAACGCGTGGTATAAGATTGAATTATCTGAATGTAGCTGCGGAAGAAGACGAGTCTGATGAAGTAAATGGTGGCGTTGTGAAG AAGAGACGGCGTAGAAAAAGAAAAACCCTAGACAAAGGTGAAGCTAGTGATGCAAAAGCAGAAGATGAGGCTAATGGTGAAGATAAGTTTAAGGGTGATT ATGAAGAACACAGTGGCTCTTTGAAGCAGAGTCGTCGTGGTAGAAAAAGAAAAGCGTTCAACAAAGATGGTGGTGAAGCTGGTGATGCAAAGGCCGAAGA TCAATCTAATGGTGAATCTGAAATGCCTTTAGAGAGCACTGCTCAGAGACGCAGCTCGAGAAGTGCTCGTAGACACAGTAATATACCAGAGATATCAAAA GTCAAGAGAAATGTCAAATTTACTGAAGAGGAATGCTTAATGTGCCATCAATGTCAGAGAAATGATAAAGGCGAGGTTGTGAGGTGCACACGTTGTAAGC GCAAAAGATATTGCTTGTTCTGTTTAAAAAATTGGTATCCTGAATGGAAAAATGATGATGTTGCCGAGGCATGCCCTGTGTGCCGTGGTAATTGCAATTG CAAAGCATGCTTGCGGTCCAATGAACTTATTAAGAAAATGAAGAAAGGGGTGGAAGAGAAGAGGTACGAAGGTAATGAAGTTGAGCTCTCCAAGTATTTG CTGATACGACTTCTTCCATTTGTAAGACAGTTGAATGAAGAACAAATGCTTGAGTTGGGTATAGAAGCTAAGAGACAAGGGCTCTCACTCTCAGAGCTAA ATATTGAAAAGGCAGAATACTCACTGAAGGAGCGTGTCTACTGTGACAATTGCAAAACATCAATATTTGATTACCACAGAAGCTGTAGAGAATGCTCTTT TGACTTATGTCTCACCTGTTGCCACGAGCTTCGTGATGGGCAGCTTCTAGGTGGTGCGGATCCATTTGAGTTGGGGTTTATCAAATGTAGTCTTCATTAT CTGCATGGAGAAAAGGAAAAGGAAAAGGAGCCTGAAATACATGAATTACCTGCTGATGCTGAGCCTGACATTCGTGGATGGTCCAGATCTGGGTGGCATG CAGAAAGTGATGGTAGTATTCCCTGTCCAAAGGTCAATGATGAATGCTCCCATAGTTTTCTTGAGTTGAAGAGCATATTTGGTCAGGCTTTTATTTCAGA GTTAGTATATAAAGCAGAAGAGCTAGCAAAAGCATATAAGCTTCAAAATGTAATCGAGACTCCTGACAACTCGTGTTCTTGTCCGAAGATCAATAAAAAC ACAGATGTTATAAATAATATGAGGAAGGCAGCTTCTCGTGAAGATTCCAGTGACAACTGGTTATACTGTCCTAGGGCTGTTGATTTACAACCTGTGGATT TAAAGCATTTTCAATGGCATTGGAACAATGGGGAGCCTGTCATTGTCAGCAATGTGCTTGAATGTACATCTGGTTTAAGTTGGGAACCACTAGTAATGTG GCGTGCTTTCCGTCAAATAACTAATACCAAGCATGGTCAACACTTGGATGTGAAAGTCTTGGATTGCTTAGATTGGTGTGAGGGAGAGATCAACATCCAT CAATTCTTTACAGGGTATACAGAGGGCCGGTATGATTGGTGTGATTGGCCTCAGATACTGAAATTGAAAGATTGGCCCCCTTCTAATTTATTTGAGGAAC GTTTACCTCGCCATTGTGCTGAGTTCATATCTTCCTTGCCCTACAAAGAATATACAGATCCTCTCAGAGGTGCTCTCAACCTTGCTGTGAAGTTACCTAC TGGCTGTCTGAAGCCAGACATGGGACCAAAGACATATATTGCTTATGGAGTTGCTCAGGAGCTTGGACGTGGTGATTCTGTGACTAAGCTTCACTGTGAT ATGTCTGATGCAGTAAGATTTATTGCCTCAAGTCTTATGTGGCTTATTTTTTTGGTGGATTTCTTCTGTTTTATCTGAATTTTTGTTGTTGTTAGTGCAC AAAATTGAAAGCTGTATAGTTCGTATGATGTATAAACTGTTTCCCTGTGAGTCATTGCTTTTCTCTTAATCTCCTTGTATTTTCTTATTACTGGATTGTG GATTCAAGTCCAAGCCATAAGTTTGTGCTTAGTCACTCAGTGTGCATTATCTTCAATGCATAAACTCATTTGATTTTATATTTGCTGGAGCAAATGATAA TTTTAAATGGAATGCTGTTATAATTGGTGACATCATCTCATGAGTAATTTTGTTGTTTATCTTGAATCTGTTTTTTAGGTAAATGTATTGACTCATATTG CCGATGTGGAATTGAAGCATAAAAGTATCCTTGCCATTGATAAATTGAAGCTAAAGCATCTTGAACAAGACAAGAGGGAGCTATTTCGAGATGATCAGGA GGGAGAAACTAATGTTGGGATGCCTACTAGTTCATCCTCTACTGTAGATTGTCTTTCAAATGGGTCAGAGTTGGAAGATGTTGAGAAAGTCAAAATGAAA CATGAAAACATTATGTCAATTGGGGATGATGCTTCAGATGGTGCTCTATGGGATATTTTTCGGAGGCAGGATGTACCTAAATTGCAGGAATATCTGAAGA AGCATTTTAGAGAGTTTAGGCATGTGCACTGCCGTCCTTTAAATCAGGTTATTCACCCCATCCATGACCAAACCATGTATCTGACGGAGGAGCATAAGAA GAAGCTAAAGGAGGAGTATGGGATTGAACCATGGACTTTTATTCAGAAGCTAGGAGATGCTGTTTTTATTCCCACTGGCTGTCCTCACCAAGTCAGAAAT CTGAAGTCATGCATTAAGGTTGCACTTGATTTTGTCTCTCCTGAAAATGTTGGTGAGTGTTTCCACTTGACAGAGGAATTCCGCACACTCCCGATAAATC ACAAATCTTCCGAGGACAAATTGGAGGTGAAGAAAATGACAGTGTATGCTATGGATACTGTGGTTAAAAACTTGGAGAAAACAAGGTCTGGGGAAACCTA GGTTTCCAAGGTAAATGTATCCATAACATATTGAAGCTGATTTGAAGTGTTTTTTTGAGCCATTATATTGATGAGGTGTGATAATCTTAGATTATGTAAT GCCCTAACTGTAGAACAGCTTTTTATTTTGTTTTCTGTAACACTGTTGTATGATGTACTTTTTAAACATCACATTACTGACATGTAATGGTGTGCATATA TGTATCACCAGTGGTATATCTTGCATTTTTATGCTTAATCAAGTTTACGGTCAGATGCTAATGTGAGCATCATACTTTTAGAACTTCAGAGTGCTTAGAT AATGAGATCTCTTAAGTTGCCCTTGTTTAATTATATTTTGCAAAATTTGGTGTTGATGTTGATGTCATGACCTATATAGTTTCTGCCACTAAAACTTTCT GAATGAG
• Tissue: pods
• Gene name: LI_gene_186999;
• Additional information: details;

Expression of Ll_transcript_296296

FPKM

• PAB: 1.5
• PNAB: 8.8
• PS1: 7.5
• PS2: 2.5
• PS3: 4.5
• PW1: 8.6
• PW2: 8.6
• PW3: 5.6

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_296296

• Blastp: Lysine-specific demethylase JMJ25 from Arabidopsis with 40.72% of identity
• Blastx: Lysine-specific demethylase JMJ25 from Arabidopsis with 57.3% of identity
• Eggnog: lysine (K)-specific demethylase(ENOG410XTAA)
• Kegg: Link to kegg annotations (AT3G07610)
• CantataDB: Link to cantataDB annotations (CNT0001036)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019427793.1)
• Pfam: Zinc-finger domain of monoamine-oxidase A repressor R1 (PF10497.8)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;