Ll_transcript_296275

• Id Trinity: TRINITY_DN51700_c0_g1_i3
• Name Transcript: Ll_transcript_296275
• Sequence: GTAAATGTATTGACTCATATTGCCGATGTGGAATTGAAGCATAAAAGTATCCTTGCCATTGATAAATTGAAGCTAAAGCATCTTGAACAAGACAAGAGGG AGCTATTTCGAGATGATCAGGAGGGAGAAACTAACATCGGTGTGCTTAGTAATTCATCCTCTAGAGTAGATGGTCTTTCATATGGGCAAGAGTTGAAGGA TATTGAGAATGTCAAATCGAATCAAGAGAACAGTGACATTGGGGAGGATGCTTCAGATGGTGCTCTCTGGGATATTTTTCGAAGACAGGATGTACCTAAA TTGCAAGAATACCTGAAGAAGCATTTTCGAGAGTTTAGGCATGTCCACTGCCGTCCTGTAAAGCAGGTTATTCATCCCATCCATGACCAGACCATGTATT TGACGCTGGAGCATAAGAGGAAGCTAAAGGAGGAGTATGGGATCGAGCCCTGGACTTTTATTCAGAAGTTAGGAGATGCTGTTTTAATTCCAGCTGGCTG TCCTTACCAAGTCCGAAATCTTAAGTCATGCATCATGGTTACACTTAATTTTGTCTCTCCTGAAAATGTTGGTGAGTGTTTCCGTTTGGCGGAGGAATTT CGCACACTTCCAATAAATCACATGTCTTCAACGGACAAATTGGAGGTTAAGAAAATGACAGTACTTGCGATGCATAAAATGGTTCAAAAAATGGAGACAG CAAGTTTAGCGAATGCGAGTTTCAAGCCTTGTGTGCATCCAATGCGAGATGCTGATGTTACACTTTCAACTTCGAAAGAGCAAGAGAAGAAGGTTCAAAC CCCTGCAACAGTTGTTGAAACTTTTGTGCAGCCCAATCTTTCTTCAAAGGAAAGTAAATCTTTCGTCACCCCCTTTACTTCAAACCACTCCTCTCTCAAT ATGGAAGTTGCTGAGGATGAAGTCATACGATCTATTCAAGCTCCTGAGGCTGAACTTTCCAGGCGAGATTTGATCAACCAGGTTGTTGAAACATCTTCTG CCTCCCTTGACCAAACTGTCATAAAAAAGGGGCATATGGTTCCTCCAGCTCCTCTATGGGACATGGTTTATGCAGCTATGGATGAATCCCTTCAATTAGA GCCTACTATCAAGGCTCTGTCAGATGATGCTGCTGGCCTCGCTCCACATTCTCCTTCAGAAAGAACTGAAAATCCTATTGTTCCTGGATATGATCCATTG GCTGAGCTGGACAGCATACTCTCAGGCAGTAAAAAACTTTCCCCCAAGTCTGGAAAGTCATCTACCTGCACTGGAGAAGACTCTAGAGAATTCAAAGTTA TCGAACACCTTGAATACCTTAAGTCAGCCATCTCTTGCCCGTTCAACCAGTTAGCTACTGAGAAGAGCCTCCAGGAGCGCCTCTACTCTCTCCTTGGCCA ATTGAGCAAGCATTCTGCCAGCCTTCCTTCATCGCTTCGACAATTGCCCATCCTTATGAAGGCATCACTCGGAGACCTAGCTGTTCAGTATCCAGCACTT CGAAGTACCATTGAGTCTCAAGAAAGGAGACTGAAAGATAAAGAGGAATATTCCAAGCTGTTGGTCAAAACTAAGAATCGTCGAATTGATCTTGATACCA ACATCAATAAAGGCAGTGTCGAGATGTCCTCTCTGGACAAGCAAATTGCTAACTATAAACAAAAGCTCATTGAAATGGAGGCCCAGAGAGAAAAGATCCA CGCCTACCTTGTCAAACACGAAGGAGAGAAGAAGAAGCTAATGGAAACTGCTGACATCTGGGTGGAAGAAGCAAGAAGAGTTATGTCAGCCATCAACGAG GCCACCAAGGACTATGATGAAGCCCTTTCGACTGAAGCAATCTATGCTCAGATGTGGGAAGGCTTCAAGAAAACCCTGGCTGATGTGAATTCTGCTTGAA CTTATCTGTCAAAGGGCCAAGGAAACCAAGATTCCCACCGTAAATGCATCCCTAACAGATTGAAGCTGATCCAAAGTATAGGTTTTTTGAGCCATTATCT TGATGGTCTTAGGTTCCATATATCCTGACTGTAAGAACAGCTTCATATTTTTGTTTTCTGTTGCACTCTTGTATGAGGCATTTTCAGAACATAATATACT AACCTGTGATGGTGTGCATGTTTGTACCACTTTCTTATCTAGGGTGCTTGTTCTTAGGCTTAATCATGTTTATGGCAGATGCTAACTTTAGCATTGTACT TTTTGAACTTCAGAATGTATAGATGATGATGTTTTAAGTTACCCTTTTTGCATTATATTTGGC
• Tissue: pods
• Gene name: LI_gene_186999;
• Additional information: details;

Expression of Ll_transcript_296275

FPKM

• PAB: 2
• PNAB: 6
• PS1: 7.3
• PS2: 5.6
• PS3: 7.5
• PW1: 3.7
• PW2: 5.2
• PW3: 5.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_296275

• Blastp: Lysine-specific demethylase JMJ25 from Arabidopsis with 52.81% of identity
• Blastx: Lysine-specific demethylase JMJ25 from Arabidopsis with 52.81% of identity
• Eggnog: lysine (K)-specific demethylase(ENOG410XTAA)
• Kegg: Link to kegg annotations (AT3G07610)
• CantataDB: Link to cantataDB annotations (CNT0001036)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019452598.1)
• Pfam: JmjC domain, hydroxylase (PF02373.21)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;