| Id Trinity | TRINITY_DN51700_c0_g1_i6 |
|---|---|
| Name Transcript | Ll_transcript_296278 |
| Sequence | TTATGACTTACTCTGTAGAATATGAAAAGTTACATAAGAACTGTGAGTCTATGAGTGTTGCGACAAAAGTGGAAACATGAAAAAAGAAATAATGTGAGGT ATATGGTTCAGTTACTACACCGTTGTTCGTTGCTCCCCAAATTCATACTTGTCATTTGATACAAACTGAATCCCCATGCCTCGCCGCAGTAAGTGGCAAC GGAACCCGCCACCCACCGTCAAAACCATTCAGGTGGCTACTGTTCAGAACAGTGACGGTTCGTGTTCGGAAGAAGGGCCAGAAACTACTGAAGATGATTC AGGAGTAAGTGATTATTCCGATCAAACTAAAGTTGGTAGAAAGAACCCATTTAGAAAGAGCAATGATGAGAGTTTGAAGAATTATGAGTCCAAACATAAC CTTGAAGGAAATAAAGATGGGTTTTTGATTAAGAAACGTGGTAGAAAAAGAAAAACCCTTTACAAATGTGAAGCTAGTGATTCAAAGGTAGAAGATCAAG CTAATGGGGAATCTCAAAACCCTTCAGAAAGCACCTTTCAGAGACGTAGCTTAAGAAATCTTCCTGGACCAAGTAATAAACAGGATATGCCAAAAATGAA GAGAGGTGTTAAATTTACAGAAGAAAAATGCCTAATGTGCCATCAATGTCAGAGAAACGATAAAGGCGATGTTGTGAGGTGTAAACGTTGTAAGAGTAAA AGATATTGCTTGTTCTGCTTGAAAAGTTGGTATCCTGAATGGAAACATGATGATGTTACTGAGGCATGCCCTGTGTGCCGTGGTAATTGCAATTGCAAAG CATGCATGCGGTCTTTTGCACATATTAAGAAAATGAAGAGAGATGTGGCAAATAAGAGGTATGAAGGTAACGAAGCTGATCTCTCTAAGTATGTACTGAT ACGTCTCATTCCATATGTAAGACGATTGAATGAAGAACAGATGATTGAGTTGGGGATAGAAGCTAAGAGACAAGGACTCTCAATCTCAGAGCTTAATATT GAAAAGGCAGAATACTCACTGATGAAACATGTCTACTGGTTGGGATGTGTTTGATTTCTTTTGTTTTTTCAGTTATACTCATATTATTTAGTTGCTGACT TAATGCTGTTTTGTAGTGACAACTGCAAAACATCAATATTTGATTACCACAGAAGCTGTAGAAAATGTTCTTTTCACCTTTGTCTCACCTGTTGCCATGA GCTTCGTGACGGGCAGCTTCTAGGTGGTCCAGATCCAGTTGAGTTGGAGTTCATCAATTGTAGTCTCGAGTATTTGTGTGGTGGAAAAGAAAAGGAACAG GTAAAAATGAAACGCACCCGTGTTGATGCTAAGCCTGAGATACACAAATCACCTGCTGGTGCTGAGCCTGACATTCGTGGATGGTCCAGATCTGGGTGGC ATGCAGAAAGTGATGGTAGGATTCCCTGTCCAAAGATGAATGATGAATGCTGCCATGGTCTTCTTGAATTGAAAAGCATATTTGGCCAGCCTTTTATTTC AGAGTTAGTATATAAAGCAGAAGAACTAGCAAAAGCATATACACTTCAAAATGCAATCGAAACTCCTGACAACTTGTGTTCTTGTCTGAAGATCAGTAGA AACACATATGTTAGAAATAATATAAGGAAGGTAGCTTCTCGTGAAGTTTCCAGTGACAACTGGTTATACTGTCCTAGGGCTGTGGATTTACGACCGGTTG ATTTAAAGCATTTTCAATGCCATTGGAATAAAGGGGAGCCTGTCATTGTCAGCAATGTGCTTGAGTGTACATCAGGTTTAAGCTGGGAGCCACTAGTGAT GTGGCGTGCATTCCGTCAAATTAGTAATACCAAGCATGGTCAACATTTGGACGTGAAGGTCTTGGATTGCTTAGATTGGTGCGAGGTTGGTTTACTATCT CAATGTTTAACTAAAGGGGTGTAATTAATTGTTTGCCTTCATTCATTTGAAGTTTATTTATAATTTATTTAATGTCTACTATTTCTTTTTACTGCAACTA CTTTGGTTGAAAGTGGCAAAAATAGAATAATTTATTCGCTGAAAACAAAATTGTATAGTGTCAAGTATTCTACATTTTTTGAATTTGATAATGTTGTCTT TCTGGATTGAGGGAGGTTGCTGAGCGTTTGATAATCTCAATTTTTCAAATACGTAGCAAACATCAGTATTGAATGCCCCACACCAGGAGAGAATTTGCAA AGCACATATTAGTTATAAATTTTGTTGTTGACTGTTGATAGTTCAATGTTAGAGATCATTTTCTGAGTGAGTGTAATTGGTCCATGTTACAATCTTGTAG TAATAGTCGTGCGCAGTATACTGTCTATTCTATTGTAACATTGTCAACCGTATGAGTATTGCTTGATCAAGTTGTGTCATTATTGTTGTCAGCTGCCTAT GACTATCGGGTCACACTCTGTATGTTAACATCTTATGTTAAATATTATCTGAATTTCATTCTTCTCGTCGTCCTTGCCTGTTTCTATTTTTCCTTGTACA ATATGGATATTTTCTTGTAACCCTTGCATCCTCTGCTTTCTATTATAATATTGGTATGTTTGCCTGCTTCTGAGGCATACTATGCTTGTAGCTGAATTCA GAAGAATTTTGGGTAGAAATATTATTGTTTTTCCAGTCCCCCCCCCCAAATCAGACTCAAGTAAATATTTTTTTTACCAATACTTTGCTGCTTTTAATTA ACATGTGTACTAAGTTGATTACACGCAGAAAGAGATCAATATCCACCAATTCTTTATTGGGTATACAAATGGTCGTTATGATTGGGTTAAGTGGCCTCAG ATACTGAAATTGAAAGATTGGCCTCCGTCTAATTTATTTGAGGAACGTTTACCTCGTCATTGTGCCGAGTTCATATCTTCCTTGCCCTTTAAAGGATATA CAGATCCTCTCGGAGGTGCTCTTAACCTCGCTGCTCTTAACCCCTCTTCTCTTCCATGTGCAAAGGCAGACATGGGGCCAAAGACATGTATTGCTTATGG AGTTAGTCAGGAGCTTGGACGTGGTGACTCTGTGACTAAGCTTCACTGTGACATGTCTGATGCAGTAAATGTGTTGATTCATATTGCCAATGTGGAATTG GTGCATAGTAGTCTCACTGCCATTGATAAGTTGAAGCTAAAACACCTCGAGCAAGACAAGAGGGAGCTACTTCGAGATGATCAGGAGGGAGAAGGTAGTG ATGGGGTGCGTAGTAGTTCATCCTCTACTGTAGATGGTCTTTCATATGGGTCAGAGTTGAAAGACGATGAGAAAGTCAAAACGAAGCAAGAAAACAGTAT GTTCAACGGGAAGGATGCTTCAGATGGTGCTCTCTGGGATATTTTTCGAAGACAGGATGTACCTAAATTGCAGGAATATCTAAAGAAGCATTTTAGAGAG TTTAGGCATGTGCACTGCCGTCCTTTAAATCAGGTTATTCACCCCATCCATGACCAAACCATGTATCTGACGGAGGAGCATAAGAAGAAGCTAAAGGAGG AGTATGGGATTGAACCATGGACTTTTATTCAGAAGCTAGGAGATGCTGTTTTTATTCCCACTGGCTGTCCTCACCAAGTCAGAAATTTGAAGTCATGCAT TAAGGTTGCGCTCGATTTTGTCTCTCCTGAAAATGTTGGCGAGTGTTTTCGTTTAGCAGAGGAATTCCGCACACTTCCGATAAATCACAAGTCTTCCGAG GACAAACTAGAGGTGAAGAAAATTATAGTGCATGCTATGGATAATGTGGTTAAAAATTTGTATAATACAAGGTATGGGCAAACCAAGGTTTCCAGGTAAA TGTATCTGTAACATATTGAAGCCTATTGAAGATTTGTGTTTATTGAGCCATCATATCCAAATTGAAACTCAATTATGAATATTGTTTGGTAAAAAATTAA GTGTGTTTGATATGCTTTGGATTTAGAGAAACTTCTTTAATGTTATGGACACCTAATTTGGGTTGAGTATAGCCTTCTTTTCTGTTTTTCTTTC BLAST |
| Tissue | pods |
| Gene name | LI_gene_186999; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_296278
| Blastp | Lysine-specific demethylase JMJ25 from Arabidopsis with 56.6% of identity |
|---|---|
| Blastx | Lysine-specific demethylase JMJ25 from Arabidopsis with 53.24% of identity |
| Eggnog | lysine (K)-specific demethylase(ENOG410XTAA) |
| Kegg | Link to kegg annotations (AT3G07610) |
| CantataDB | Link to cantataDB annotations (CNT0001036) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019441694.1) |
| Pfam | JmjC domain, hydroxylase (PF02373.21) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |