| Id Trinity | TRINITY_DN51712_c1_g1_i10 |
|---|---|
| Name Transcript | Ll_transcript_295641 |
| Sequence | TTGATAGCAAAGATTGGTCTCGGTATGGATACATGCGTAGAGTCTTCATAATTTTGAAGAACAACTTTAAAATTTTGGAACTACAATCGGAATCAACACA GGACTCGAAGCCCCCTGCTCAAACAAAATGGTAATCCTTCGGAATTGAAAATTCCTTTCGGATTTATTATATTCATAATTATAGTGGAGGGGAGAAGACT CATTTTTAATTCTATCTATATAGGGGGGGGGAGCCATTGTGAAGCCTAGAGAGGCGGAAGCGGCAAATCGCTTCTACCGAGTTCCCCAACAGCAGCTTAG CTTAGTAGCTTAACTCTTTCTACTGGCGTGGTGCTACTGGATGCTTCTGATCAATAGAACAGGAACAGGAACAGGAACAGGAAGAGGAGGAAAAAAAAGC TTATGATGAGCATCTATTTGAGTCGATCATTTCCAAGATCTAATTCAAGTTTATTCTTATGTAGTGGAAAGGCCTTACAATCTGAAGTTTTACGCTTAGG GGAAGAAATGTTCTTGGTGGATGCAGGACCTGGGACCGCCATAATTTGTATGCAAGATGAGCTTACAGGAGTGCCAATCAACCGAGCCACCAGGTTTGAG AAGAAGGTGGGATTCCTGGATCTAGTGGCCGGTGAATCACTGATCAAAAAGAAGATTTTGGAGAGATTATTCATCGATCTAGTGGCCGGCGAATCACTGA TCAAAGAGCGAGCAGCCGCCAGGTTTAATGATTTGGTGGGATCCACAGATGTAGTGGCTGGTGAACCGCTTCTTCTTCTTCCACGAAGATTCAGACAAAA CCGAGCTTGGATGGAACTGAACAAGATTTGGCGAACGAATACAAAGGTAAAAGGCTTTATTATTAAAAAAGTAAAAGGAGGTTATTCAGTAGCCATCGCG GGTTTCATTACTTTTATTCCATTCCGTTGTTACAAAAAAAGGAAAAGGATATCGAATGATCGATTCACCATTGAGAGCATTAACCCCAAAAGGATGAATA TTGTGGTGTTCTAACAGCGGCAGATCAAAGAATAACTTGATGAGCGAAATCTGCTGTAAAAAAAAAATAAAAGAGCAGTTTTTTTAAATTCCGAAGCGAA ACCTAGCGTCTCCTGATAACACTCTATCACCTTAATCCATTCTTTTGTTGAGGGTCTGGCACTTATGACAGGCCGCTCTGTCATTGTCTGATTTTTGGTT GTCTGATCACACTCGAAATTATGTATCTACTTATCGTCTTTTTGCCCCTTATCGGTAGTTCCGTAGCAGGTTTTTTCGGACGTTTTATAGGATCAGAAGG AACCGCTATAATGACCACTACGTGCGTTTCATTCTCTTCGATCTTATCTTTGATTGCTTTTTATGAAGTCGCACTGGGAGCTAGTGCTTGCTATCTAAGA ATTGCTCCATGGATCTCATCGGAAATGTTTGATGCTTCTTGGGGCTTCTTTTGCGACCGTGAAGTCACCGGATGAATTGCCGAGTAGATAGATCAGATCC GGACGCGGCTGTTGCTCCGCGGCGATACGGACTCGACCCGCTCCTACCCACCCCGGGGTACCATAGCATGTCGGGAAGAAGGGGGGACATACTGGACGTA ACCACTCCCTTGGGGGCTGTGCCGCCCTGCCTTTCGATCGATACACAGTTGAGTAGGCCGATCACGAACGCTACAGGTGTGGGAGCGATCCTGGTCAGGG AAGGCTAAGACGGCGCCTCGCATATGGGTAGCAAGAGGGCGCTTATGCCCCGACGGTGGGGCCTTATGGGGAAGGGCCCAGCCCAGATTATAGGGACTGC ACACCCCCCACTTCAAGCGCACCTCTGTATCGACTGAATCACTCTAAGAGTCTAGTCGGTGGAACCGGTGAACCACGCGAGCTGGTTAGATGCGTGGGGC AGAGGGCTCGTAGTACCCCCTTTTCTTGATCCAGCCTTTTCTTCGCTTCGGTAGTGAATTACCTACTAAAAAAAGAGGCAGGCCTGCACGCCCTATTTGA GACTACTAAGGCAGGCGGTGGACTCTTTCATTAGGGAAGGGAAGAAGGGGCCTAAGCACGGCAGATGCCGTACACTTGAGTGGCAAAGGAAAGGGAGATC GTACCTCTTTTTCCAGGCCTGTTCGGACATACGGTTCCCGCGGAAGATCAAGTTGGTGAGCCGTGTGATGGGAAACCTTCCCGCACGGTTCGGAGAGCAC TTAATTAGAATGAGAGGTTCACCACCACATCATTGCATGCAAGGAGAGCTCGCTCGATTCGCAAATTGGTCCGACTCGTAATTCACTTCTGACTCCGTGT TCGATAGCCTGACCGTAGTGATGTTAATTGTGGTTACATTCATAAGTAGCTTGGTCCATCTTTATTCCATTTCATATATGTCTGAGGATCCGCATAGCCC TCGATTTATGTGTTATTTATCCATTTTTACTTTTTTTATGCTAATGTTGGTGACTGGAGATAACTTTCTTCAATTATTCCTGGGATGGGAGGGAGTAGGT CTTGCTTCATATTTGTTAATTCATTTCTGGTTTACACGACTTCAGGCAGATAAAGCAGCTATAAAAGCTATGCTTGTCAATCGAGTAGGTGATTTTGGAT TAGCTCTTGGGATTTTGGGTTGTTTTACTCTCTTTCAAACAGTAGACTTTTCAACCATTTTTGCTTGTGCTAGTGTCCCCAGAAATTCTTGGATTTTTTG CAATATGAGATTGAATGCCATAACTCTTATTTGTATTTTACTTTTTATTGGTGCTGTTGGGAAATCTGCACAGATAGGATTGCATACTTGGTTACCCGAT GCTATGGAGGGTCCCACTCCAGTATCCGCTTTGATTCATGCAGCTACTATGGTCACAGCTGGCGTTTTCATGATAGCAAGGTGCTCCCCTTTATTTGAAT ACTCACCTACGGCTTTGATTGTTATTACTTTTGCAGGAGCTATGACGTCATTCCTTGCGGCAACCACTGGAATCTTACAGAACGATCTAAAGAGGGTCAT AGCTTATTCAACTTGCAGTCAATTAGGCTATATGATCTTTGCTTGCGGCATCTCTAACTATTCGGTTAGCGTCTTTCACTTAATGAATCACGCCTTTTTC AAAGCATTACTCTTCCTGAGTGCAGGTTCGGTGATTCATGCCATGTCGGATGAGCAAGATATGCGGAAGATGGGGGGGCTTGCCTCCTCGTTCCCTTTTA CCTATGCCATGATGCTCATGGGCAGCTTATCTCTAATTGGATTTCCTTTTCTAACTGGATTTTATTCCAAAGATGTGATATTAGAGCTCGCTTACACTAA GTATACCATCAGTGGGAATTTTGCTTTCTGGTTGGGAAGTCTCTCTGTCCTTTTCACTTCTTATTACTCTTTTCGTTTACTTTTTCTAACATTTCTAGTA CCAACTAATTCATTCGGGCGAGACATCTTACGATGTCATGATGCGCCCATTCCTATGGCCATTCCTTTAATACTTCTGGCTCTCGGGAGTCTCTTTGTAG GATACTTGGCCAAAGATATGATGATTGGTTTAGGTACAAATTTTTGGGCCAATTCCCTCTTCGTACTACCAAAAAATGAGATTCTTGCCGAATCCGAGTT TGCTGCTCCAACCATTATCAAACTAATACCTATTCTGTTTAGTACTTTAGGTGCTTTTGTTGCGTATAATGTAAATCTCGTAGCGGATCAATTCCAACGA GCCTTTCAAACGAGTACTTTTAGTAATCGACTCTATAGCTTCTTCAATAAACGCTGGTTCTTCGATCAAGTTTTGAATGACTTTATAGTCAGATCGTTCC TGCGTTTCGGATATGAAGTCTCATTCGAAGCTTTAGACAAAGGTGCTATTGAGATATTGGGCCCTTATGGTATCTCGTACACATTCCGACGATTGGCCGA GCGGATAAGTAAACTTCAAAGTGGATTTGTTGTGCGAAGAGTGCGTTATGACCCGTGGCCGCCTGCCTGGTCTGGTGGGGGCGGCTCCTCCGTTGTGGGT AAACGGGAAACCCGACTCTACGAACCCGAGGAAAGGCTGCAAAGCAGTAGTAGGGGCGTTCAGACCGGAGCTTTTTGTAGTGCTAGCAGGAATGCAAGTG AATGAATCCCATCCCCTAGCGAGTGAAGTGCTTACGCCCCTTTAGATTAGAGATAGGGGCGCGCTAGCGCTTTAATAATAATAAATAATAGAAAAGGGGG CTGAGAAAAGCTTGCTGTCTACTTCTCGAGCCTTCACTGCCCCGTTCTTTAACTTCCCTTCTTTAGTCCGTCCACGAGGCTGTAAAAAGAGAGAGAGGGG CGGCTATATAGCGGGAGTCGTTTCGGTTGTATGCCACGAGGTCCCTATGGACAAGGGGACAAGTGAATCATCGCTTTTGGGCGCAGGCAGCCCTCTACCA TCCATCCCATTGCATTCCATCGTCTCGTATTGTACTGTACCGTACCAGACCAGATACATCTATTGAGTGAGAGAAAGGTAGCTTCTCTATATATATTCTT AAAATTTTATATTTATAGGGATCCCCAGATTCCCGTCACTACGGATTTTTTTTCTCTACCTAACTACATGGTAGTGGTCTAGGGAGCGCAATTGCTAGAG CACGGGAGAATGAAGAGTAATGATTTCAGCAAGAGCAGCCGGACGGACTACTATAGTGAGTCCAGTGACTACTAGAGTAGAGTTGAGTCAAAAGGTATGG TATAGCTGCCTTTCCGAGCGAGCCTCTGGGATCTCCTGTAAACCCCCATGATGTGGTAAAGTAAAGGGAGGATATTAGGGGAAGCAGTTAGTGGAGATTC CCCTGCAGAGAGCCGGATGAGGGGAGACCTTCACGTCCGGTTCGGAGGGCGGGGATATCCCGACCCTACTATCATTATGCCTTTGCAATGTTACTTGGTT TAACTCTATTTGTGACCTTTTTTT BLAST |
| Tissue | pods |
| Gene name | LI_gene_187064; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_295641
| Blastp | Ribosomal protein S1, mitochondrial from Marchantia with 35.12% of identity |
|---|---|
| Blastx | NADH-ubiquinone oxidoreductase chain 5 from Arabidopsis with 97.78% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | Link to cantataDB annotations (CNT0002281) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (YP_009237614.1) |
| Pfam | - |
| Rfam | Intron_gpII (RF00029) |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |