Id Trinity | TRINITY_DN51712_c1_g1_i16 |
---|---|
Name Transcript | Ll_transcript_295651 |
Sequence | TTCTGGTTCTGCCCTTTCCTCTTTACTTTCTATATTCTTGTTCGATTCTTTCCTTTTGATTTAAAAATAAAGATATTTTGCTTATATCTAACAAGGCCCA AGTTGAAGCGGGCTCTTTCTCTTGTGAAATGGCTCATCGTTTTTTATGTCTTAACATGTTCTGCCTTTAGGCTGTACAACAACTTTACTTCCTTCGTTCT ACTTCATTCCCTGTGTTACGTACTTCCTTTTGATCCGGTCTGGGTGGACGGACCTGCTGGATCCTGCTACGTCAACAAGTTCAGGCACGGGCTCCGTGAA TCAGCCGCCAGAGGGAATGCCTGTTCCTCCCGCTAATCCTGTCGCTCCCGGGGAAGCGGATATTCGACCTGTCGTAGCCTACCCCTATCAGGAAGATTAA ATGATAGGGGGACAGAGTGTTCTAGATATAAGGACACGACTCTTAAGATCCAAGGCCCAACCATCTGCCGAGGAAATTAACAAGGCCCATATTAACGCCC AAGACCGCTTCGAAGTCAAGGTGGATATTATCCAGCAGATGGCAGTCCTTGATTCGGAACCAAGTGGCGATTGGACGGGACGGGGAGCGCGGGCCCTGGA CAATCCCCGTGCGGTCAGAACCGGGGGGGAACCTTCCTTAATAGAGCTCTATCGCCTTAGGGACGAGCTCCATGAGGGAGGAGTACAATCCGATGCCTTT TTAAGGTAAGGCTAAAGGATAAGATTTTCACCAGAGTAGATAATCTGGATGAGAACTCCACTACTTAATGGTGCTACTGGATGCTTTTGATCAATAGAAC AGGAACAGGAACAGGAACAGGAAGAGGAGGAAAAAAAAGCTTATGATGAGCATCTATTTGAGTCGATCATTTCCAAGATCTAATTCAAGTTTATTCTTAT GTAGTGGAAAGGCCTTACAATCTGAAGTTTTACGCTTAGGGGAAGAAATGTTCTTGGTGGATGCAGGACCTGGGACCGCCATAATTTGTATGCAAGATGA GCTTACAGGAGTGCCAATCAACCGAGCCACCAGGTTTGAGAAGAAGGTGGGATTCCTGGATCTAGTGGCCGGTGAATCACTGATCAAAAAGAAGATTTTG GAGAGATTATTCATCGATCTAGTGGCCGGCGAATCACTGATCAAAGAGCGAGCAGCCGCCAGGTTTAATGATTTGGTGGGATCCACAGATGTAGTGGCTG GTGAACCGCTTCTTCTTCTTCCACGAAGATTCAGACAAAACCGAGCTTGGATGGAACTGAACAAGATTTGGCGAACGAATACAAAGGTAAAAGGCTTTAT TATTAAAAAAGTAAAAGGAGGTTATTCAGTAGCCATCGCGGGTTTCATTACTTTTATTCCATTCCGTTGTTACAAAAAAAGGAAAAGGATATCGAATGAT CGATTCACCATTGAGAGCATTAACCCCAAAAGGATGAATATTGTGGTGTTCTAACAGCGGCAGATCAAAGAATAACTTGATGAGCGAAATCTGCTGTAAA AAAAAAATAAAAGAGCAGTTTTTTTAAATTCCGAAGCGAAACCTAGCGTCTCCTGATAACACTCTATCACCTTAATCCATTCTTTTGTTGAGGGTCTGGC ACTTATGACAGGCCGCTCTGTCATTGTCTGATTTTTGGTTGTCTGATCACACTCGAAATTATGTATCTACTTATCGTCTTTTTGCCCCTTATCGGTAGTT CCGTAGCAGGTTTTTTCGGACGTTTTATAGGATCAGAAGGAACCGCTATAATGACCACTACGTGCGTTTCATTCTCTTCGATCTTATCTTTGATTGCTTT TTATGAAGTCGCACTGGGAGCTAGTGCTTGCTATCTAAGAATTGCTCCATGGATCTCATCGGAAATGTTTGATGCTTCTTGGGGCTTCTTTTGCGACCGT GAAGTCACCGGATGAATTGCCGAGTAGATAGATCAGATCCGGACGCGGCTGTTGCTCCGCGGCGATACGGACTCGACCCGCTCCTACCCACCCCGGGGTA CCATAGCATGTCGGGAAGAAGGGGGGACATACTGGACGTAACCACTCCCTTGGGGGCTGTGCCGCCCTGCCTTTCGATCGATACACAGTTGAGTAGGCCG ATCACGAACGCTACAGGTGTGGGAGCGATCCTGGTCAGGGAAGGCTAAGACGGCGCCTCGCATATGGGTAGCAAGAGGGCGCTTATGCCCCGACGGTGGG GCCTTATGGGGAAGGGCCCAGCCCAGATTATAGGGACTGCACACCCCCCACTTCAAGCGCACCTCTGTATCGACTGAATCACTCTAAGAGTCTAGTCGGT GGAACCGGTGAACCACGCGAGCTGGTTAGATGCGTGGGGCAGAGGGCTCGTAGTACCCCCTTTTCTTGATCCAGCCTTTTCTTCGCTTCGGTAGTGAATT ACCTACTAAAAAAAGAGGCAGGCCTGCACGCCCTATTTGAGACTACTAAGGCAGGCGGTGGACTCTTTCATTAGGGAAGGGAAGAAGGGGCCTAAGCACG GCAGATGCCGTACACTTGAGTGGCAAAGGAAAGGGAGATCGTACCTCTTTTTCCAGGCCTGTTCGGACATACGGTTCCCGCGGAAGATCAAGTTGGTGAG CCGTGTGATGGGAAACCTTCCCGCACGGTTCGGAGAGCACTTAATTAGAATGAGAGGTTCACCACCACATCATTGCATGCAAGGAGAGCTCGCTCGATTC GCAAATTGGTCCGACTCGTAATTCACTTCTGACTCCGTGTTCGATAGCCTGACCGTAGTGATGTTAATTGTGGTTACATTCATAAGTAGCTTGGTCCATC TTTATTCCATTTCATATATGTCTGAGGATCCGCATAGCCCTCGATTTATGTGTTATTTATCCATTTTTACTTTTTTTATGCTAATGTTGGTGACTGGAGA TAACTTTCTTCAATTATTCCTGGGATGGGAGGGAGTAGGTCTTGCTTCATATTTGTTAATTCATTTCTGGTTTACACGACTTCAGGCAGATAAAGCAGCT ATAAAAGCTATGCTTGTCAATCGAGTAGGTGATTTTGGATTAGCTCTTGGGATTTTGGGTTGTTTTACTCTCTTTCAAACAGTAGACTTTTCAACCATTT TTGCTTGTGCTAGTGTCCCCAGAAATTCTTGGATTTTTTGCAATATGAGATTGAATGCCATAACTCTTATTTGTATTTTACTTTTTATTGGTGCTGTTGG GAAATCTGCACAGATAGGATTGCATACTTGGTTACCCGATGCTATGGAGGGTCCCACTCCAGTATCCGCTTTGATTCATGCAGCTACTATGGTCACAGCT GGCGTTTTCATGATAGCAAGGTGCTCCCCTTTATTTGAATACTCACCTACGGCTTTGATTGTTATTACTTTTGCAGGAGCTATGACGTCATTCCTTGCGG CAACCACTGGAATCTTACAGAACGATCTAAAGAGGGTCATAGCTTATTCAACTTGCAGTCAATTAGGCTATATGATCTTTGCTTGCGGCATCTCTAACTA TTCGGTTAGCGTCTTTCACTTAATGAATCACGCCTTTTTCAAAGCATTACTCTTCCTGAGTGCAGGTTCGGTGATTCATGCCATGTCGGATGAGCAAGAT ATGCGGAAGATGGGGGGGCTTGCCTCCTCGTTCCCTTTTACCTATGCCATGATGCTCATGGGCAGCTTATCTCTAATTGGATTTCCTTTTCTAACTGGAT TTTATTCCAAAGATGTGATATTAGAGCTCGCTTACACTAAGTATACCATCAGTGGGAATTTTGCTTTCTGGTTGGGAAGTCTCTCTGTCCTTTTCACTTC TTATTACTCTTTTCGTTTACTTTTTCTAACATTTCTAGTACCAACTAATTCATTCGGGCGAGACATCTTACGATGTCATGATGCGCCCATTCCTATGGCC ATTCCTTTAATACTTCTGGCTCTCGGGAGTCTCTTTGTAGGATACTTGGCCAAAGTGTGACCCGTTAGCCCATAAGTAAGTACTGTGACGAAGCGGCTGT TGCTCACCCGACACGATCGTACGAGGTCACAATTCACCCAACACGATCATCCGGGGTGAACAAGAATTGGGGATCGGATGCGGGCGAAATTCCCGCCAAT GGCTGAGATGTTCAGTCGACTCCCTCCCCCCTTTGTGGGGGTCCGGACCCCTTACGAGTGAGCAGACGAGTGAGCAGAAAAGGGAGGAGGAAAGAGGCCC TGGCGAACCGTCATAATTAGTAAACAAGTGTAAGCTTTGCTGCCCGACAGTATGGAGTACTGACCACACCGAGGGACAGGCCCTGAAGCGAAGGACAGGA ACGAGCGGAATCAATGTCTTCCAATTTCTGGCCTTGCACCGACCATCTAATGGACCATGGACTAAACGGCCACTGCCTGAAAGGACTATGCCCCGTGGAC CGCCGCCCCCCCCCACAAGGTACATCTTGCGCCTATGGGCCGCTATAACTATCCAAGAAGACACTCGAAACTGGAAGGATAAACAAACCCACCCGGTGGA CTGCCGAGCTACAAGTCCCACGACACAGGAGCGGGATTCTCTAAAAAGCCAAGGTCGCGGGTGGCCAAGAGGGCCCACTTGGAGACTTGGGATCTCAGCA GGAAATGCGAAGGTTGCTTAAAGCCGGCCGATAGGCGAAAGAGAATCAACTAGTTTAGTTCTGATCTGAGTAGGCTTCTAATAGGGAATACTCTAACCCT GGGAACCGGGGâBLAST |
Tissue | pods |
Gene name | LI_gene_187064; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_295651
Blastp | Ribosomal protein S1, mitochondrial from Marchantia with 35.12% of identity |
---|---|
Blastx | NADH-ubiquinone oxidoreductase chain 5 from Triticum with 98.5% of identity |
Eggnog | - |
Kegg | - |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (YP_009237614.1) |
Pfam | - |
Rfam | Intron_gpII (RF00029) |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |