| Id Trinity | TRINITY_DN51712_c1_g1_i7 |
|---|---|
| Name Transcript | Ll_transcript_295636 |
| Sequence | TTGATAGCAAAGATTGGTCTCGGTATGGATACATGCGTAGAGTCTTCATAATTTTGAAGAACAACTTTAAAATTTTGGAACTACAATCGGGACTCGAAGC CCCCTGCTCAAACAAAATGGTAATCCTTCGGAATTGAAAATTCCTTTCGGATTTATTATATTCATAATTATAGTGGAGGGGAGAAGACTCATTTTTAATT CTATCTATATAGGGGGGGGGAGCCATTGTGAAGCCTAGAGAGGCGGAAGCGGCAAATCGCTTCTACCGAGTTCCCCAACAGCAGCTTAGCTTAGTAGCTT AACTCTTTCTACTGGCGTGGTGCTACTGGATGCTTCTGATCAATAGAACAGGAACAGGAACAGGAACAGGAAGAGGAGGAAAAAAAAGCTTATGATGAGC ATCTATTTGAGTCGATCATTTCCAAGATCTAATTCAAGTTTATTCTTATGTAGTGGAAAGGCCTTACAATCTGAAGTTTTACGCTTAGGGGAAGAAATGT TCTTGGTGGATGCAGGACCTGGGACCGCCATAATTTGTATGCAAGATGAGCTTACAGGAGTGCCAATCAACCGAGCCACCAGGTTTGAGAAGAAGGTGGG ATTCCTGGATCTAGTGGCCGGTGAATCACTGATCAAAAAGAAGATTTTGGAGAGATTATTCATCGATCTAGTGGCCGGCGAATCACTGATCAAAGAGCGA GCAGCCGCCAGGTTTAATGATTTGGTGGGATCCACAGATGTAGTGGCTGGTGAACCGCTTCTTCTTCTTCCACGAAGATTCAGACAAAACCGAGCTTGGA TGGAACTGAACAAGATTTGGCGAACGAATACAAAGGTAAAAGGCTTTATTATTAAAAAAGTAAAAGGAGGTTATTCAGTAGCCATCGCGGGTTTCATTAC TTTTATTCCATTCCGTTGTTACAAAAAAAGGAAAAGGATATCGAATGATCGATTCACCATTGAGAGCATTAACCCCAAAAGGATGAATATTGTGGTGTTC TAACAGCGGCAGATCAAAGAATAACTTGATGAGCGAAATCTGCTGTAAAAAAAAAATAAAAGAGCAGTTTTTTTAAATTCCGAAGCGAAACCTAGCGTCT CCTGATAACACTCTATCACCTTAATCCATTCTTTTGTTGAGGGTCTGGCACTTATGACAGGCCGCTCTGTCATTGTCTGATTTTTGGTTGTCTGATCACA CTCGAAATTATGTATCTACTTATCGTCTTTTTGCCCCTTATCGGTAGTTCCGTAGCAGGTTTTTTCGGACGTTTTATAGGATCAGAAGGAACCGCTATAA TGACCACTACGTGCGTTTCATTCTCTTCGATCTTATCTTTGATTGCTTTTTATGAAGTCGCACTGGGAGCTAGTGCTTGCTATCTAAGAATTGCTCCATG GATCTCATCGGAAATGTTTGATGCTTCTTGGGGCTTCTTTTGCGACCGTGAAGTCACCGGATGAATTGCCGAGTAGATAGATCAGATCCGGACGCGGCTG TTGCTCCGCGGCGATACGGACTCGACCCGCTCCTACCCACCCCGGGGTACCATAGCATGTCGGGAAGAAGGGGGGACATACTGGACGTAACCACTCCCTT GGGGGCTGTGCCGCCCTGCCTTTCGATCGATACACAGTTGAGTAGGCCGATCACGAACGCTACAGGTGTGGGAGCGATCCTGGTCAGGGAAGGCTAAGAC GGCGCCTCGCATATGGGTAGCAAGAGGGCGCTTATGCCCCGACGGTGGGGCCTTATGGGGAAGGGCCCAGCCCAGATTATAGGGACTGCACACCCCCCAC TTCAAGCGCACCTCTGTATCGACTGAATCACTCTAAGAGTCTAGTCGGTGGAACCGGTGAACCACGCGAGCTGGTTAGATGCGTGGGGCAGAGGGCTCGT AGTACCCCCTTTTCTTGATCCAGCCTTTTCTTCGCTTCGGTAGTGAATTACCTACTAAAAAAAGAGGCAGGCCTGCACGCCCTATTTGAGACTACTAAGG CAGGCGGTGGACTCTTTCATTAGGGAAGGGAAGAAGGGGCCTAAGCACGGCAGATGCCGTACACTTGAGTGGCAAAGGAAAGGGAGATCGTACCTCTTTT TCCAGGCCTGTTCGGACATACGGTTCCCGCGGAAGATCAAGTTGGTGAGCCGTGTGATGGGAAACCTTCCCGCACGGTTCGGAGAGCACTTAATTAGAAT GAGAGGTTCACCACCACATCATTGCATGCAAGGAGAGCTCGCTCGATTCGCAAATTGGTCCGACTCGTAATTCACTTCTGACTCCGTGTTCGATAGCCTG ACCGTAGTGATGTTAATTGTGGTTACATTCATAAGTAGCTTGGTCCATCTTTATTCCATTTCATATATGTCTGAGGATCCGCATAGCCCTCGATTTATGT GTTATTTATCCATTTTTACTTTTTTTATGCTAATGTTGGTGACTGGAGATAACTTTCTTCAATTATTCCTGGGATGGGAGGGAGTAGGTCTTGCTTCATA TTTGTTAATTCATTTCTGGTTTACACGACTTCAGGCAGATAAAGCAGCTATAAAAGCTATGCTTGTCAATCGAGTAGGTGATTTTGGATTAGCTCTTGGG ATTTTGGGTTGTTTTACTCTCTTTCAAACAGTAGACTTTTCAACCATTTTTGCTTGTGCTAGTGTCCCCAGAAATTCTTGGATTTTTTGCAATATGAGAT TGAATGCCATAACTCTTATTTGTATTTTACTTTTTATTGGTGCTGTTGGGAAATCTGCACAGATAGGATTGCATACTTGGTTACCCGATGCTATGGAGGG TCCCACTCCAGTATCCGCTTTGATTCATGCAGCTACTATGGTCACAGCTGGCGTTTTCATGATAGCAAGGTGCTCCCCTTTATTTGAATACTCACCTACG GCTTTGATTGTTATTACTTTTGCAGGAGCTATGACGTCATTCCTTGCGGCAACCACTGGAATCTTACAGAACGATCTAAAGAGGGTCATAGCTTATTCAA CTTGCAGTCAATTAGGCTATATGATCTTTGCTTGCGGCATCTCTAACTATTCGGTTAGCGTCTTTCACTTAATGAATCACGCCTTTTTCAAAGCATTACT CTTCCTGAGTGCAGGTTCGGTGATTCATGCCATGTCGGATGAGCAAGATATGCGGAAGATGGGGGGGCTTGCCTCCTCGTTCCCTTTTACCTATGCCATG ATGCTCATGGGCAGCTTATCTCTAATTGGATTTCCTTTTCTAACTGGATTTTATTCCAAAGATGTGATATTAGAGCTCGCTTACACTAAGTATACCATCA GTGGGAATTTTGCTTTCTGGTTGGGAAGTCTCTCTGTCCTTTTCACTTCTTATTACTCTTTTCGTTTACTTTTTCTAACATTTCTAGTACCAACTAATTC ATTCGGGCGAGACATCTTACGATGTCATGATGCGCCCATTCCTATGGCCATTCCTTTAATACTTCTGGCTCTCGGGAGTCTCTTTGTAGGATACTTGGCC AAAGTGTGACCCGTTAGCCCATAAGTAAGTACTGTGACGAAGCGGCTGTTGCTCACCCGACACGATCGTACGAGGTCACAATTCACCCAACACGATCATC CGGGGTGAACAAGAATTGGGGATCGGATGCGGGCGAAATTCCCGCCAATGGCTGAGATGTTCAGTCGACTCCCTCCCCCCTTTGTGGGGGTCCGGACCCC TTACGAGTGAGCAGACGAGTGAGCAGAAAAGGGAGGAGGAAAGAGGCCCTGGCGAACCGTCATAATTAGTAAACAAGTGTAAGCTTTGCTGCCCGACAGT ATGGAGTACTGACCACACCGAGGGACAGGCCCTGAAGCGAAGGACAGGAACGAGCGGAATCAATGTCTTCCAATTTCTGGCCTTGCACCGACCATCTAAT GGACCATGGACTAAACGGCCACTGCCTGAAAGGACTATGCCCCGTGGACCGCCGCCCCCCCCCACAAGGTACATCTTGCGCCTATGGGCCGCTATAACTA TCCAAGAAGACACTCGAAACTGGAAGGATAAACAAACCCACCCGGTGGACTGCCGAGCTACAAGTCCCACGACACAGGAGCGGGATTCTCTAAAAAGCCA AGGTCGCGGGTGGCCAAGAGGGCCCACTTGGAGACTTGGGATCTCAGCAGGAAATGCGAAGGTTGCTTAAAGCCGGCCGATAGGCGAAAGAGAATCAACT AGTTTAGTTCTGATCTGAGTAGGCTTCTAATAGGGAATACTCTAACCCTGGGAACCGGGG BLAST |
| Tissue | pods |
| Gene name | LI_gene_187064; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_295636
| Blastp | Ribosomal protein S1, mitochondrial from Marchantia with 35.12% of identity |
|---|---|
| Blastx | NADH-ubiquinone oxidoreductase chain 5 from Triticum with 98.5% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (YP_009237614.1) |
| Pfam | - |
| Rfam | Intron_gpII (RF00029) |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |