Ll_transcript_295905

• Id Trinity: TRINITY_DN51718_c0_g1_i21
• Name Transcript: Ll_transcript_295905
• Sequence: GTCCTCTCTCTTATCTAATCCTCTACTATCCACACAAACAAAGCTTAAGAGAGAAGATTAAATAAACCAAAACCCACACTTGTTCTCATATTCCTTTCGT CACCATCACCATTACCATTCATTATCACCATTATCATCACCACCTTCCTCTCTTTTTCTTCTATCGTTCCTGTTTTTTCTCAAAACCCTCTTCATTATTT TCCCTTTTCTCACTCTTCTTCTATTCCTCTCAATTTTCCCCAATTCATATGATCCCTCAGGTGATAAATAACCTAATTCACCCTTCTTTTCTTCATTCAA CGCTGTCCATTATTTACACCCCCTCTTCATTCAATTAGCTTCATTCCCATTCCACGGTACGAAAAAATCTTATTTTTTGGGGAAAAATCGTATTTTTTTT GTGTTCGAACCCAAACTTATAAAATAGAAGAGAAAGAGGAAAGGTTAATTGATTGAAGATTAGGGTTTTTTTGTTTTGTGAAAAAAGATGGAAACTTTGG ATGGTAATTCAAACCGGTATGCTACCATTTCTTCTAATTCATCATCAGCATCATCTTCTGGAGGTGTTAATAGTAATGATAACAATGCTAATAGTGGTAG CAGTTCTGGCATTGTAAACTGGTATGGTGTGAATTTGCCTTCTGTGAGAACTTTGCGTTCTCCACTTTCGTATTTATTGGAGCACACTGGCATCCTAACC TCAGGTCCTCCTTCTGAGAATGTAATTGTCAACAATGGAGTTACGGGTTCGGAGTTACGGTCTCAGCTTCAAAATCAATCACTTGATGGTGGTGGTGGTG GTGATGTTGGAACACCCTGCACGAATAGGGCTGGTGAAGTTGCAATAAGGATCATTGGAGCTGGAGAGAATGATCACAATGTGGTAGGGTCTGGTACTCC TTCATCCTCGTCATGGAATCGGCGCGGAGAAGCTAGTTATGGTGGTTATGATGATGTAGTGAGTGGTAGAGATGGAATGCCTGGATTGGTTGTTAGCGGT GGTGGTGAGGATCATGGTGGAATTGCTGCTGGCCCGAGGGTTCCTCGGGTGTCTTCGTCTTCGACTTTGGCTGGTAGTGGACAAGTTGGTGGGAATGCAA CTGGGAATGGGTTAGAAAGTAACGGTAGGGAGTCGTCATCCTACCAGAGGTATGATATTCAGCAGATAGCAAAGTGGATTGAGCAGATTCTGCCTTTTTC ACTCTTGCTGTTTGTTGTTTTCATCCGTCAGCATTTGCAAGGTTTCTTTGTCACAATTTGGATATCAGCTGTGATGTTCAAGTCAAATGAAATTGTTAAA AGGCAGACAGCATTGAAGGGAGATAGGAGAGTATCTATCCTTGTTGGCATCTCAATTGCCTTCATGCTTCATGTGATGTGCATTTACTGGTGGTATCGAA ATGATGATCTTTTATACCCGCTGATCATGATTCCCCCAAAAGCTACACCTTTTTGGCATTCAATATTCATCATTTTGGTTAATGATACATTGATGCGGCA AGCAGCAATGGCTTTCAAGTGTTTTCTGCTTATATATTACAAAAATGGCAGAGGTCAAAACTTCCGTAGGCAGGCTCAAATGTTGACTCTGGTTGAGTAC ACACTGCTGTTGTATCGTGCCTTGTTGCCAACTCCAGTTTGGTACCGTTTTTTCCTGAACAAGGATTATGGCAGTCTCTTTTCATCACTGATCACTGGGT TGTATTTAACTTTCAAGCTAACATCTGTTGTTGAGAAGGTTAAATGTTTTTTTTCTGCCGTGAAAGCATTATCAAGAAAGGATGTTAACTATGGGGTTTG TGCCACAATGGAACAGGTTAATGCTGCTGGTGATCTATGTGCTATATGCCAGGAGAAGATGCATGCCCCCATCTTGTTGCAATGTAAACACATTTTCTGT GAAGAGTGTGTATCAGAATGGTTTGAGAGAGAAAGAACTTGCCCACTTTGTAGAGCATTGGTAAGACCTGCTGATCTGAAAACCTTTGGAGATGGATCTA CAAGTCTACTGTTTCAGTTGTTTTAAACTCATATTCTGTATTGATATCACATGTACAAACCCGAGGGGGTCCACTAAGTCACTAACTCATATTTATTCCT AATGTGTTAGGCAAATATGGTGAACACAAATTGTTCATATTATTACATCCTTTTGCTTTTAAGTATATGTAACAGGCTTTATGCTATAATATATGAGCCC TTCTTGAATTTGCTACTTATTATT
• Tissue: pods
• Gene name: LI_gene_187120;
• Additional information: details;

Expression of Ll_transcript_295905

FPKM

• PAB: 7.7
• PNAB: 6.7
• PS1: 11.3
• PS2: 6.7
• PS3: 10.6
• PW1: 8
• PW2: 12.6
• PW3: 10.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_295905

• Blastp: RING finger and transmembrane domain-containing protein 2 from Homo with 28.97% of identity
• Blastx: RING finger and transmembrane domain-containing protein 2 from Homo with 28.44% of identity
• Eggnog: Ring finger protein, transmembrane(ENOG4111HH8)
• Kegg: Link to kegg annotations (84900)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019431458.1)
• Pfam: Zinc finger, C3HC4 type (RING finger) (PF13920.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;