| Id Trinity | TRINITY_DN51720_c0_g1_i4 |
|---|---|
| Name Transcript | Ll_transcript_297480 |
| Sequence | TCCATGTCAACACGTTAGGTAAAATAAAATAAAAACATAAATAAAAGTAATTTAAGAAAAATAAGTAAATATTAGTGGTATTATTTATTTAAAACCCCAA GTGAAGGGTTCACTGAAATATATATCTGCATTTATATCGCAGATTCGATTCGATCATCTCTTCTTTTCTCTTCTCTACCTCTGTAACTTGCAAACGCCGC CGAAGATGGCTCCACCGGCGGTAGCTGCAGGCCAAGGAGGCCAGCAACCACAACAACAAGAAGGAGGTTTCGGGAAAACCATAACCGGAATAATACGCAT GGCGGTGTTCTGGTATTTCGCTTCCAAATTCTTCTCTCCCAAACGTGCCCCTACCGATCCTTCTGGCGCTCCTGCTCCTCTCATCTCCAATCTCTTTCAA AAGAATCAGCCTCTCGATATGTGGGTATATCTTTCCGAGCATGAGAAGTTTAATGACTTTGGTCGTGAAGAGTCTCTTGTATGGCATGAAACCAATATTC CATATGCTTCTTGGGGAGCTGAGAGTACCAGAAATCTTGCTTTGAAATATGACCCATCTGAGAATTTAAAACATAATGGGAGTCTATATGCTCATGTATT CTTTGCACAATCTGGATATTCGCCTGACCCAAATGACCCAGAATATCAGCCCCAGGCAGCATTTGGAAGGACATATGCTGTTGTGAAATACTTACCCAAG TCAAGAGCAGATAAAAGGAGAAGTTTGTTGGGAAGTTCACCAGATTCTAGCGAGGATCCAGTGGCCTCCAAGGTGGCTGATGATGCTCAAAATGATTCTG AGGACGATGGCCCTGTGGAGTGGGTTTCATACTTGAAACCGAATATAACAATAAACTTGGTTGCTGATTTCACACAGTATGTTCCTTGCAATTCCTTAGA TTTTCTGGTGCATTTAATTTTAAAATATATTTTCTTTATCTGTGTCCTATTTTTAAGCCACTAACGATCTCTATAAAATTTGACATCTGATTATTGTTCT TTGAGAAAGCATCATGCAGAAAATGCAAGAGTCTGGCAGATAAACTGATCTATTTTAATGAAAAGTCTTATGTCTTTAGATTTGAACGAACTTGTATCCT AGAGGGTTGAAACACCTCAGCTGTGTAGTAATAAGTTAACAGTTACTTTCAACTTTGAAGTAAGTAACCAAATTGAGTTAGCTAAGGGGTGTTTTTGTGT GCCAACCGCTATTAGTCCTTCCTTCTCTTTGTGTCTCTTCAGCAACAATTTTCAACATTGACCACCCAAGGAGATTGAAATTAGTGCTATTAAGAAATTA TGTGATGTTAGTATAAGGATACAACCTTTGGTCCACCTGTACATAGTCCACCCAGTTGTCTGAAGTTCTCTCCTTGGCATTTTGTAGTTGTGCCATTCTG GTGGGAAAACTTACAGTTAGTGAGTTTTCTTTCCACACACTGCTTATTCTTATGTTACCTTTGCCTGTTTGCAGGTACTCGAAAAACGGCATCCCACCAA ACATTGCTCCATGTATCCTTGGCATTTACTTCTTTTGCTTATTGGCATTTTGTTTATATTTTTTGGCCATTATATTTTCTTGGTTTCTGGATTCCATGTC TAGTATTAAAAAAGAATATTATTCCTACAATACTATGCAAAATTAATATACTCATTAAAACTAATGGACAATTTTTAGATAATGGAGGTTTATATAATGA AATACCTTTCCGTAACTTTCCTATGTGTATGCTCTTTCTTTCCTTTTTTGTTTCTTATTTTAACCTCTTCTGTGACCTTATATTGTTGATGCATGTTCAA ACTCTCCTTCCCTATTTGGGTGTTATTATTATGTTGGCAAGTTAACTGATCATATGTCTGAGTTTCTTTAATTATGCATCCCAGACTTGAGTGTTGATCC TATCACAGGGAACTACTACCCGACTGTTTTTTTCAATGAGTTCTGGTTGCTCAGGGATAAGCTGATACAATTGAATGAGACAGTAACCGAATTAGTGATC AATCTGGAGGTTGGTCCCATTAGTATGACAAAGTGGCAACTATTCTTGCAGATTGATCAGTCCTTCCAGATTCACCGTAGTTATGGGAGCATGGTTGACG GAGAGGGTGATGAGCTGAAGGTAGTTTAAATTTTTTGTCACAACTTCTATGTAATTAATTCAATGATGCACAATGCCTAGTTGCTGTAGAATGAACTTGG TGGAAATGGATCTTGCATTGCATGTTGAATATTGAAATGACTTCTGACATTTGGGTTCTTAGGCTTTTGTTTTTCATTAAGCTGCCTCCCTTAACCAGTA CATCCTTCTCTAAGAAGTTGGCTTCAGCTCCTAAGGGCTCTTGTATTAGGTGGATTAGAGATATAAAACCATTCCTAGACCTCTACCGAATAACCTAGGC TTTTAAGGGAACTAGTTTTGACAGTAACTTATATTAATGGTCCTACAAATTTATGATGGAATTTCAAATGGTCCTGTAACAAATTTCTATGTTGTGCACT TGTGGACCTGTTTCCCACTGAATTTATGAATGCCTTGTTTCTTGAAATGCCTGACTATGTGTTGTTTATATCAGAGGGTATTCTTGGAAGGAAATCCTTA CCTCCTGGGAGTTACCATGACTGTTTCTCTACTTCACTCGGTTTTTGATTTCTTTGCTTTCAAGAACGGTAAGTGATTCTGTATGATTTTCATTAGGAAA GTAACTCCAGAAAGGAAGTTCTGATAAATTTGGTTGGAGACATAGCTTGCAATCTAATTGTTTTCTTCCTGCCCAGACATCCAATTTTGGAACAAAAATA AATCTATGGAAGGTCTCTCTGCAAAGTCGGTTGTTGTGAGCTTTATTTCACAACTTATTGTCTTCCTCTATCTGCTTGACAATGATACCTCGTGGATGAT TCTTGGTAGCTCTGGAGTTGGTTGCATTATTGAGTTCTGGAAAATTGGAAAAGCAATGCACATAGAGATTGATAGGACTGGTAGAATACCTATGTTAAGG TTCAGAGATCGAGACTCATATGCACAGAACAAGACAAAGGAATATGATGATATTGCAATGAAGTATTTATCATATGTTCTATTTCTACTCGTTGCTGGCT CCTCCGTTTACTCTTTGATGTATGAGCGTCACAAGAGCTGGTATTCTTGGATTCTGTCTTCACTCACTAGTTGTGTCTACATGTTTGGTTTTATTATGAT GTGCCCTCAATTGTTCATCAACTACAAGCTCAAATCTGTTGCTCATATGCCTTGGAGGCAGATGACTTACAAGTTCCTCAACACCATCATTGATGATCTT TTTGCCTTTGTCATTAAAATGCCAACATTGCATCGCCTTTCTGTCTTCCGTGATGATATTATCTTTCTCATATACTTATACCAGAAGTGGGCTTATCCAG TAGACAAGAAACGTGTAAATGAATTTGGTTTTGGAGGTGAAGATGACACGGCTGTGGCTTCTACACAGGTGGATGCTGCTGCTAAGGAAGAAGAGAAGAA AACTAACTGACCTACTTTTATGTCAGCCACTTCAGATATTTGTTTTTTATTTATTTCGGGTAGACAATCGACTTACCAAATTTTTTACATGGAATACTAT AAAATTCATGAGACTCTGTTAAGTGAGATCCTCGTATACTCTGCTCTTTTTACTATAAAATTTCCCAGCTATTAATTTGTTTTTATATTCTTTCTGCTAT GCAATTTTATTAGGTTGTTAAAGATGCTGAAAATTATTATTTTTTAAATAAAAGTGGAGGGAAGGGGTGAAGGTATTTTTTTTATACATAGGGATGAAGG TATTTAACTACAAGGGTCAGGTCAAACAGCTTTTAGGTTACAAGGTTTGTGTATATGGAGGCTCTTAACAAGTATTTTTTGTAGTTTTCTGTGTTTATCT CCCCGTCTTGTATTATTTTCTTTCTTGTTATGCAAATTTATACTTCAAATGAGGTAAAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_187124; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_297480
| Blastp | CLPTM1-like membrane protein cnrB from Dictyostelium with 60.45% of identity |
|---|---|
| Blastx | CLPTM1-like membrane protein cnrB from Dictyostelium with 52.17% of identity |
| Eggnog | cleft lip and palate(ENOG410XPEV) |
| Kegg | Link to kegg annotations (DDB_G0283115) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019432410.1) |
| Pfam | Cleft lip and palate transmembrane protein 1 (CLPTM1) (PF05602.11) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |