| Id Trinity | TRINITY_DN51720_c0_g1_i6 |
|---|---|
| Name Transcript | Ll_transcript_297482 |
| Sequence | CCGAGCTAGTAGCTTCTAGTCCCTGTACCTTTACCAATACTTGTAAATAGTAATCACACATCACCGCTTTTTTTCAAAATCAGTGGACCCAACTTCTATC ACATTTTCCATTCCATAACCGCTTTTTCTCTCTGTTCAACATGGCGCCACCACCACCGGCGGCAGTTCAAGGCGGCGAAGTACCGCAAGTTAGACAACAA CAGCAGCAGCAAGGAGGTTTTGGCATCACCGGAATCATTCGTATAGCGGTTTTCTGGTATTTTGCTTCCAAATTCTTCTCTCCCAAGAAACCTACTCAAC CTTCTGCTCTCATCTCCAACCTCTTCCAGAAAAGCCAGCCTATGGACATGTGGCTATATCTTTCCAAGCACGAGAGGTTCAATGACTTTGGTAATGAAGC TGCTCTTGTATGGCATGAAACAAATATTCCATATTCTGTTTGGGGACCTAAGAGTACCAGGTTACTTACTTTGAAGCATCAGCCATCTGAGGCTTTGAAG CACAATGGGAGTCTATATGCTCATGTTTTCTTTGCACATTCTGGATATTCACCTGACCCAAGTGACCCAGAATACCAGCCTCAGACAGCATTTGGAAAGA CACATCCTGTTGTAGTATACTTGCCCAAGAAAAGAGCTGATAAAAAGAAGAGTCTGCTGGGGAGTTCACCAGATTCTGGTGAGGATCAAGCGGCATCCAA GGTGGTTGATGATACTGAAGATGATACCGTGGATGATGGTCCTGTGGAGTGGGTTTCCTATTGGAAACCAAATATAACAATAAACTTGGTTGCTGACTTC ACTCAGTATGTTTCCTACAACTCATCGAGTTTGTTGGTGCAAATTTTTTGCTACCATTATGGTTTTTTACCAGTCATAGTTTCCATTTGAAATTAACAAC TGCTGATTCCTATTGTGTGAAAAGTGACACAGGAGATGAAAGAGACTGTCAGATAACTTGGTCTCCTTTTAATAGGAATTTTTAAATTGTTGCTTGGATG AAACTGTTTAGAAGAACCTTTAAAAGCATAGTTCTAGACTTCTCCGTAGCTGTCTAGCTGAGCAAGTTAACTGATGGATATTTTTTAATTCTGCTTATTT TTATGTTATACTTTTCATGCTTGCAGGTACCGAAAATAGGCATACCCACGAAACATTGCTTTTGATATGAATACTTTAAATTGTTGCTTTGATTAAACTA TTTAGCAAAACCTTTAAAAGCATATTTCTACACTTGTATGTAGCTGAGCAAGTTAACTTATGGATATTTTGTTCATGCTGCTTATTTTTATGTTATACTT TTCCTGCTTGGAGGTACCCAAAAACAGGCATACCACCAAACATAGCTCCATGTATCCTTGTCATTTACATCTTTTGCTATCTGACATTTCATTTCCATTA CCGTACTAATTTTACTTTATTGGCATTGGTTTCTGGATGCCATGTGCATTACAGTATTTTGCTCACATTATCAAAGATTATTGCAGAGGTTTGAGCCACA ATGCAATGGTAAGGTTGTTGTTTAATGACCAAGAGCTCACAGGTTCAAATCCTAGAAATAGATTTTCTGCTTGCAGGGGTAAGGCTGCATACATCTACCT CCCATACCCCATTAGGTAGTAGCCTTGTGTCCTCGGCTGCTCTTTTTATGAAAGATTAATGCACAGCATCTAGATGGCAATGCCTATACAATTAAGTACT ACCAGTCACTTTTGTCATTTTGTTTGTTAATGTTGACACTTACGTATTCATGCTCTCCTTTCTTGTTTTCATCTTCCCATTAATTTTTTGTTTCATCAGC AACGGAGTGCCCTATCCTACGTGTCTGAGTTTCCTTAACTTTGGATGCCCAGATATGAACATTGATCCTATCACTGGGAACTACTATCCAACTGTCTTTT TCAATGAGTTCTGGTTACTCCGGGATAAGTTGATACCTTTGAATGAGACAGTAACTGAGTTATCACTTAATCTGGAGGTTGGTCCCATTAGTATGACGAA GTGGCAATTGTTCCTACAGATTGACCAGTCCTTTCAGATTCACCATAGCTATGGAAGCATGGTTGAAGGCGAAGCTGATGAGCTGAAGAGGGTATTCTTG GAAGGAAATCCTTACCTCCTGGCAGTTACTATGGCTGTTTCTCTTCTACATTCAGTTTTTGACTTCTTGGCTTTCAAGAATGACATCCAATTTTGGAACA AAAATAAATCTATGGAAGGACTCTCTGCAAAGACTATTCTTGTGAGCTTTATTTGCCAGCTTATTATCTTCCTTTATCTGCTTGACAACGACACCTCCTG GATGATTCTTGCAAGCTCTGGAATCGGTTGCATTATTGAGTTCTGGAAAATTGGAAAAGCCATGCGCATAGAGATTGATAGGACAGGTAGGATACCTATG TTGAGGCTCCGAGATCGAGAATCATATGTACGGAATAAGACAAAGGAATATGATGATATTGCAATGAAGTATTTATCCTATGTCCTATTTCTCCTTGTTG TTGGCTTATCTATTTACTCACTGATGTATGAGCGTCACAAGAGTTGGTATTCTTGGATTCTATCTTCACTCACAAGTTGTGTATACATGTTTGGTTTTAT TATGATGTGCCCTCAATTGTTCATCAACTACAAGCTTAAATCTGTTGCTCATCTACCTTGGAGGCAAATGACTTACAAGTTTCTCAACACCATCATTGAT GATCTTTTTGCTTTTGTCATTAAAATGCCAACCCTACACAGGCTTTCTGTCTTCTGTGATGATCTTATC BLAST |
| Tissue | pods |
| Gene name | LI_gene_187124; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_297482
| Blastp | Cleft lip and palate transmembrane protein 1 homolog from Bos with 31.73% of identity |
|---|---|
| Blastx | CLPTM1-like membrane protein cnrB from Dictyostelium with 55.52% of identity |
| Eggnog | cleft lip and palate(ENOG410XPEV) |
| Kegg | Link to kegg annotations (618037) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019433905.1) |
| Pfam | Cleft lip and palate transmembrane protein 1 (CLPTM1) (PF05602.11) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |