Id Trinity | TRINITY_DN51729_c2_g1_i4 |
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Name Transcript | Ll_transcript_297551 |
Sequence | ACAAAGAAGATTCTCGCTTTTTGGAATCGGAGATTCTTCTTCTTCTTCTTCATCATCCAATTTGGTAGGTAACAATAACAACAACAATTCATCATCAAAG GGTGTTGCAGAAAAAGTGATTCCATCACTGAAACTTGAAACTGATAGAGAGGTTTATAGACCTTGTGATCCACTTCTTGTGACCATTCAGATCTCAATTC CATCAAATGGGTATTCTTTTTTGGTGGAAAGACTCAGTTTTGAGATCAAAGGGATTCAGAAATTGGATACTCACTGGTTTGCTACACACAAACCTGTACT TGCTTCTAACCAAAAGAGAGGTGAACATGTATTTTTAGAGTTCTCGACACCAATCCTGATTGCAAACCAGATCGTTAATGCTGGCACCAGCAAATCATAT GTGGTGCGAACTGTACTGCCTAACATCATTCCGCCATCTTACAAGGGTTCAAACATTCGCTATTTGTACTACGTTAAAAGTGCATTAACTGGAGGGTGGC TAATTCTGGAAAATGGGCAATCTCGTCTAGAGTCCATAAAGCATGTAAATGATTTTGTTGGTTTTGCATTGATTTGCTCTGATTTATGCTGAAATGAAGC ATCAACTTATTTGCATGCTATGAGTCTTGGTTCTAATGATGGTTTTTTTTATTTATAAATCTTGCTTAAAAATGTGTTTTCTTGGGAAGAAGAGTTCTGA GAAGGAAAAAGAAAAAATTGCTTTCGGAGAAGCCTAAATCTCAACACGTTAAACCCGATGATGAGTTTTCCACACTAATGAAAATGGAATATTTTAGAGT AATTAGCCCGAGTGTAGTAGGATTACTAAACTTGAAATGTATATACGCTACTTTCAGTTTGTTGCTGCTATTTGCTTCAATTCTTGAAGTTTGGAGTGGG ATAGTCCTTACAAGTAAAACGCTTTTGCTTTTTCTGTTGTCTATTTGGGCTCATTCATAGACTTGCTTTATTGCCGGATTTCTTTAGTTTATTTTGCTAA GTGGCAACAAGAACAGAAGTCTTTTCCCAGTAGTTGAAGGTGCCTACATGAAGCAAATATTTCCGTTGTGTTTTGTCGTAAACTAATTCTTTAGACAGGC CATACAGATCTAAGAGTCCTTTTTAACTGTTTCACCTAGAGTTTTTATTGGTCTCCGTCTACATTTATGGTTGGTCAAAACAAATTTGCAGTTTAGTCAG GTTACAAATAGGAGAAGTAAAATATTCTAGGCTTTCACATGTTCTTAGGAATCAGGATTAGGATTTTATTGCATCATATGGTAAACAGACCTACACCTAA CTGAAAATATTGTAAAAACTGCTTTCTTTTCGAACACCTTGTGCTGCAGTACCAATCCTCCCGAAACATCTTGGAATCCAAAAACACAAGGCAAAATAAA TTCCAAGAAACATAGCAAGGTATTGAATGCTATAAACTGCACCATTTTCTGGGATGAGTTATAAAAAGACTATAAATGGCAGAAATCCTATCCTATGAAG TTTTAATAAATGAATTACTCTTTTTATGTGATATTAAATATGAATAACTTAAATTTGAAGTTTAATGAATCTTAAATTTGGACTTATGAATCATGTGCTG AATTTGTTCATAGGCTGGTGGGTTTTGCCTACTTACGAATTTCAATAACTGTTGCTAGAATCCTTTATCAACATGATGGAGTTTTTTACTTTTGCAATAT GCACTGCATAAAAGAATTTGCAATGGGCATGAAGACGTTATATGCCACGAAAAGTCGTGTAGAAACCCATTTTTGTGGACATTTAATTTGAACTTTTTAA TAAGTTTTGATGTGTCTTTTTTTGTAAGATTTCGAAGCTTGTTTACTAAAATCTTTTACAGGAAGTTCGTATTCCATTACAAATATGGATAAACCAGAAA AACACTGGCATTCTAATGGATGAAGATATTGTTCCCCCAACTACTGTCCAACTGGATATATTTTGGAAAGAGATGGACGGAGATGCTGATTGGGTATGCT ATTGGTGATATTTTTTTATTGGGTAAACTAAACTTATCTGTGGTTGTAGCTTAAATTTATCTGTCACCCTCTGCCTTAAGAATGCCCTTATTCGGTTTTA ATTCTAAAACATTGTGTGTGCAAAATGTGAAATGACTCAAAAAGTTACACTTTAAGTTAGTTGGATAGAGCTGGCACTTTTTCTAAGAACAAAGCATCTA TGTTTGTCTAAAACGAATACTTAGAATGAAATACATGATAGTGACTTTCTAGGGAAATGAATGTGGGCTATAAATTGACAATACTCGCTATGCTAGTTAT TTATTATGTTAATGCATCTTTATATTTATTTACGTTCTATAAACTATAATAATATTTGTTTTTAACGGATGGCTAGATGACGATGTTGTGTAGTTGTGGG AGATTCTGTTAATACAAAACCAGGTGGTTTACTTTGATTTTAAGAACACTGATCATAGTGGAGATCTTAAACGTTATATTTATCTTGAAATTTATTTCTT AGCTTTTTAAATTACTGGCTAATGTTTATTCATTCATTTGGTTTGTGGCTTGGCATTTGAATTTTGGATGGGCTGTTTGCATTTTATTAAGAGTAGCCAT GTTCATAACGCTTGGAGAAGCTATTGACTTATTCATTGATTTCAGGAAGGGAAAATGTTCGAATGGCAACTCACTATTGTAGTTTCTATTCATGTCTATT AGCATTGATCTTCTGCATTTTGGCTTTCCTAATAACTAGTGGTACCGAAGTTAATGATTTGGCTAGGGCACATATTTAATATGGTTATTGATATTATCAC GGTTGTTGCTGCTATTCAAGAAAAGAACACACTTCGGTTAGACACTTAGACTATTGAGCTGATACTCCACTAGTCCACTTGAGCAGCACTATCTTATGTG TTTGGTGTCCTTGTTTTCGGACTCGTACTTGAGTAGGAGAACATTAGAAGGTTATGTGAGTGATGAAGCCCCTCGGGAGTAAGGAATGGTTTAATTGAGG ACCACATAAGTTAGAAGATCCATAGACTTAATGCTTTAAAATTTTGATTCTAGATATAGTGCCAGGCTCGGTTTTGGTTTCTCGCTTAGTCCATTGATGG AGGTCTTCCCAGATTTTGGCCTCCTCCTGACCTCCTATCAATATCGGCCTTAGTTAAACTTCACTTTCCCCCTATCAACCCAGATTTCTTTATTGAAATT AGGTATTTCTCTGCTTATGGTTTCTTTCGATGCAGTAACTTTTACTTACCGCATGCTATCCTTGGACCCTTGATATAACATAGAATCATTTTGTTACAGG TTAGAGCAGATGATATGTATGATGGTGTTGATGAGGGATATGACAGCTCAAGAGATGATATCTCCTCTGTTTCTTCATATAATCACTTGAAAGGAAACCT ACTCAGAGGCTTTGGAAGTTCACCATCATTGCGATCTTCTTCCACAAGATCATTGAACAGGGATACTTCTGCTTTAGAAGGTCGTCGAACAAGTTTATCT TCAAATATGGCGCTTCCCCGACTATCAGCTGCTGAGGTGTTATCTGATTCCGGTCCCGATATCTTATCAACCCAGAAGTCATTTGGCATTGTCTCCCCAA GTGAGCAACAGAAGCTCAGAAAACCGTTTTCTCCAGATGGTGCAGGAGGATCGTCTTCGCCAGAAGCTGGAGCCATTGAATCTTTAGCATCAGAAGGCTT CATTAGAGGAAGGTCTTATAACATCAGACTTGACGATCAAGTTTTGCTTAAATATTCCCCTAGAAATTCTGACTCAACTTATTACTTCAGTGATATGATA GGAGGGACTCTTACATTTTTTCACGAAGAAGGAGCTAGGAGATGCCTTGAGATCTCAATAACATTGGAAACTTCGGAAACTATAAATCGGCGATTTGTCC ACCCTTCTCGGAGGAATTCACCTACAATCACCAAGGTTCTGAGTGACCATCACGAGGTTGTTGCAGATTTGGTGCAGACAAGCTTTCTATTTTCTATCCC CATGGATGGCCCAATGTCCTTCTCCACTGCACATGTATCCGTGCAATGGGTTCTCCGCTTCGAATTTTTCACCACTCCGAAGCATGTGGATTGGAAAAAA TATGAGCATCCTCTTCTGATTGAGGGAAGGGACAAAACCGAATGGGTTCTTCCAATTACTGTGCATGCCCTGCCACCAAGAACTCCTGCTTCTGGCACAA GAAATGAGAAGCTCTTCTCTCTGGATCCTATGTGGGTGCACAATTGAAGGTTAGAGCAGATGATATGTATGATGGTGTTGATGAGGGATATGACAGCTCA AGAGATGATATCTCCTCTGTTTCTTCATATAATCACTTGAAAGGAAACCTACTCAGAGGCTTTGGAAGTTCACCATCATTGC BLAST |
Tissue | pods |
Gene name | LI_gene_187193; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_297551
Blastp | RAB6A-GEF complex partner protein 2 from Homo with 30.41% of identity |
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Blastx | RAB6A-GEF complex partner protein 2 from Homo with 30.41% of identity |
Eggnog | RGP1 retrograde golgi transport homolog (S. cerevisiae)(ENOG410YESN) |
Kegg | Link to kegg annotations (9827) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019449629.1) |
Pfam | Rgp1 (PF08737.9) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |