Ll_transcript_294921

• Id Trinity: TRINITY_DN51747_c1_g1_i17
• Name Transcript: Ll_transcript_294921
• Sequence: ATTTTATGCCTGTTGCTGAATTGAGTGATTCTAGTAGAGGTTATGTTGTGAATGATACATGTATAGTTGAGGCTGATATTGCTGTACGTAAGGCTAGTGA TTACTGGTCAAATGACTCAAAAAAGGAAACTGGTTATGTTGGACTGAAAAACCAAGGAGCTACTTGTTACATGAATTCTCTCCTTCAGACATTGTACCAC ATTCCTTATTTTAGAAAGGCTGTGTACCATATGCCTACAACCGAGAATGATATGCCATCGGGGAGCATTCCTTTGGCATTACAGAGTTTATTCTACAAGC TGCAGTACAGTGACAGTAGTGTAGCAACTAAAGAGTTGACCAAGTCTTTTGGATGGGATTCATATGATTCATTTACGCAGCATGATGTCCAAGAGCTTAA TAGGGTTCTTAGTGAAAAGCTGGAGGACAAAATGAAGGGAACTGTTGTGGAAGGCACCATACAACATTTGTTTGAAGGCCACCATATGAACTATATTGAA TGCATCAATGTAGACTATAAATCGACAAGAAGGGAGTCATTTTATGATCTGCAGCTTGATGTCAAAGGATGTAGAGATGTGTATAATTCTTTTGACAAGT ATGTGGAAGTCGAGCGACTTGAGGGTGATAACAAGTATCATGCTGAGCAGTACGGTTTACAGGAGGCTAGGAAGGGTGTCTTGTTCATTGATTTCCCACC TGTCCTCCAGCTTCAATTAAAACGGTTTGAATATGATTTCATGCGTGACACTATGGTAAAGATCAATGACCGCTACGAGTTCCCCTTGCAATTAGATCTT GATAGGGACAATGGCAAGTATCTATCTCCTGAAGCAGATAGAAGTGTTCGCAATCTGTATACACTTCACAGTGTCTTGGTTCATAGTGGTGGGGTTAATG GCGGACACTACTATGCTTATATAAGGCCAATTCTATCAAATCAGTGGTTTAAATTTGATGATGATCGAGTAACGAAAGAAGATGCAAAGAGGGCCTTAGA AGAACAGTATGGTGGCGAGGAAGAGTTACCTCATACCAACCCTGGGTTCAACAACTCTCCCTTTAAATTTACAAGGCACTCAAATGCATATATGCTTGTG TATATACGTGACAGTGACAAGGACAATATAATTTGTAGTGTGGATGAGAAAGACATTGCCCAACACCTCATAGTAAGGTTAAAGAAAGAACAAGAAGAAA AAGAGCTGAAGAGGAAGGAGAAGGAAGAGGCTCACTTGTACACTATCTTAAAGGTTGCACGTGATGCAGATCTGCACCAACAGATTGGAAAGGATATATT TTTTGATCTAGTGGATCATGATAAAGTACGGACTTTTCGCATTCGAAAACAAACTCCCTTCATCACTTTTAAGGAAGAAGTTGCTAGAGAGTTTGGTATA CCTATCATGTCCCAACGATTTTGGTTGTGGGCAAAGCGCCAAAATCATACTTACCGGCCAAACAGACCACTGACTCCTCAGGAAGAAACACAAACTGTTG GACATTTAAGAGATGTTTATAATAAGGCAAATAATGCAGAGCTGAAGTTATTTTTGGAAGATGGACAGGACTTTGGGCTTATTCGTCTTCCCGAGAAGCG AAAAGAAGATTTGTTGCTATTCTTTAAACTTTATGATACTTCAAATGAGACACTCCGGTATATTGGGAGGTTGCATGTGACAGGTAGTGGGAAGCCCATG GACATATTGACAAAACTAAATGAAATGGCAGGATTTGCTCTTGATGAAGAAATTGAACTTTTTGAGGAAATAAAATATGAACCTCGTGTCATGTGCGAAC ATGTTGACAAGAATGTCACATTCCATGCCAATCAGCTCGAGGATGGAGATATTATTTGCATCCAGAAGGCTCTTGTTGGAAGTGGTGAGCAATTTCGCTA TCCGGATGTTCCTTCATTTTTGGAATATGTTCATAATCGTCAGGTCGTACGCTTCCGGTACTTGGAGAAACCAAAAGAGGATGAATTCAGTCTTGAGTTG TCAAAGATTCACACATATGATGATGTTGTAGTAAGAGTTGCTGAATATCTTGGTTTGGATGATCCTTCTAAAATTAGACTCACATCTCATAACTGCTACT CCCAGCAACCTAAACCACAGCCTATCAAGTACCAAGGAGTAGAACATTTGTTTGACATGCTGACTAACTGCAATCAGACTTCTGATATTCTGTACTATGA AGTATTGGATATCCCACTGCCGGAATTGCAATGCCTTAAAACACTTAAAATTTCTTTCCACCATGCTACCAAGGATGAAGTTGTGATTCATACTATCAGA TTACCGAGGCAGAGTGCAGTGGAAGATGTAATTAATGATCTCAAATCAAAGGTGGATTTATCACATCCTGGTGCAGAACTTAGGTTGCTCGAAATTTTGT ATCACAGGATCTATAAGATTTTCCCACCCAGTGAAATGATTGATAATATCAATGATCAGTATTGGATCTTAAGAGCAGAAGAGATACCCAAAGAGGAGAA AAATCTAGGCCCTCATGACCGTTTGATCCATGTTTATCATTTCATGAAAGACACTGCACAAAATCAGGTGCAACTTCAGAATTTTGGAGATCCTTTTTTC CTGGTTATTCATGAAGGTGAGACACTTGCTGATATTAAATTGCGGATACAGAAAAAGTTGCATGTTCCAGATGAGCACTTTTCAAAGTGGAAGTTTGCAT TTGTGTCACTTGGTCGTCCTGAGTACCTTCAAGATTCAGATATCATTTCTACCCGGTTTCAGAGAAGAGATATCTATGGCGCTTGGGAGGAATATCTTGG ATTGGAACATGCTGACAATTCTCCAAAAAGGTCCTACGTTGCCAACCAGAACCGTCACTCATTTGAGAAGGCTGTAAAAATCTACAATTAGGAAGGATAC ACATCCTTCTAAATCAGTCAACATAATAATGTGTCATGCTAGTGGGAACTTGCACAGCTTTCTTAAGGTGGCAGAAGAAATGTAGAGATGCTGTCAATAT TCTCATTCTCATTCACCTATTTAAATTCATAGTTTTGTAGCTTAGGGGACCGGTATAGCCTTGATCGGATCATTGGTTTGGTTCTTAGAGTTGCTTCTGA ACTCATTCTCTCAAGCCCTCATTTCTTTGCTGCTTAGGAGATATACTTCTAATTCCCATGTTATGCTAGTACATAAGATTTTGGGTTGGGTTTTTGTATA GAAGTTATGGTCATATAATTTAACTGTTATCTATGTCTGGTTCTTCCTTTCTAGGCTTTTCGTTTGCTTTGCTTGGAGATGTGAGAAGATCAGGATTGTG TACATGTTTTTGCAGGGTTGTTAATGTAATTTGTTCTTATGCCATTTTTGACCTAAGATTTTGATTAAAGGCCTACTGATTTGTGTTAAAAGGAAACACT GTACTACCCTTAGTCTCATTCTCACAAATGCTGTTTCTCTATTTTCTTCTATATTGCCAAAAGTGCCTTTGTTC
• Tissue: pods
• Gene name: LI_gene_187324;
• Additional information: details;

Expression of Ll_transcript_294921

FPKM

• PAB: 0.7
• PNAB: 6.4
• PS1: 8.6
• PS2: 9.9
• PS3: 11.5
• PW1: 8.1
• PW2: 6.9
• PW3: 5.9

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_294921

• Blastp: Ubiquitin carboxyl-terminal hydrolase 12 from Arabidopsis with 79.98% of identity
• Blastx: Ubiquitin carboxyl-terminal hydrolase 12 from Arabidopsis with 79.98% of identity
• Eggnog: ubiquitin carboxyl-terminal hydrolase(COG5077)
• Kegg: Link to kegg annotations (AT5G06600)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019461345.1)
• Pfam: Ubiquitin carboxyl-terminal hydrolase (PF00443.28)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;