| Id Trinity | TRINITY_DN51751_c0_g1_i3 |
|---|---|
| Name Transcript | Ll_transcript_295280 |
| Sequence | CAATTTTGTTTTTCTCTCTTTCATTTTCAATTTCTTATACCCACACAATTATTTCTTCTTTTTTCTCCCTCCAAAATCATTTCCATCTCTTCCAATTTTC CTCCTTCCATTTTCATCTCATTTTCTATTCTTTCCACCCTCAGATCACAGTTTCCGTTTTTCATAATTTTATATATTATTATTATTATATTCCGCTAATT GATTCATTCTAAAGATCTAGGGTTTCTGAAGCTCAATATCTGAACCGCATTAATCTAATTGTTATACGCTGCTTCGATTCAAAGGCATTGAAATTTGTGT TTTGCTTGATCTGTGATTTGGTGTATTGTGAATGAGAGATAAGAGTTTTGGTTAATTTAAGAACATGGAGGTCGTTACTGATGCGGCGTCGTTTGATGCC GAATTGTTGCAGCTCCCGGAGTTTTCCTCTCCGGCTATCAAGTCTAATCTCAATTTCGTTGAGAAGATTTTCGATCAGTGGTTGTCCCTTCCAGAAAGTG TTCGATTGGTAACGTCATTGCTCAATGAGGCAAAGTCAGGTGCTCCCTTGAATGTCCCGGGGAATTGCTCTAGTCCAAATGCTGCAAGTAATTCTTTGCC TTCCATGTTTCCTGCTGGAACTGCTCCACCTCTTTCACCGAGAAGTACATCTGGTTCTCCTCGCATAGTAAAACAGAGAGCTGGCCTATCTAACTTGGGT TCCCCTTTGAAAGTTGTCAGTGAGCCAGTTAAAGAAGTTATACCTCAGTTCTACTTTCAACATGGACGCCCACCTCCAAATGACCTGAAAGAAAAATGTT TGTTTAAAATTGATCATTTATTCCATGATCACTTGGATGGCCTACAGATACATGAATTCAAATCAGTTACTAAGGAACTATGCAAGCTGCCATCTTTTTT CTCCACTTCTCTTTTCCGAAAGATTGACAATGGAACCGGTCTTGTAACAAGGAAAGCATTTATTGACTATTGGATTAACGGGAAAATGTTGACGATGGAT ATAGCAACTCAAATATACACAATTTTAAAACAACCACAGCTGAAGTACCTAACTCAGGATGATTTTAAACCTGTGCTACGTGAGCTTTTATCAACTCATC CTGGCCTGGAGTTTCTGCAAAGCACACCTGAGTTTCAAGAGAGATATGGTTTGCATTTTCTTGATATAACCTTGTGTTTTAGAGGTTCATGTAATCGTAA ATTGAGGAAATGAGTTTAAGATTCTGGTAATGCTTAGTTCTGGAATGATCGGACCCAGGAGAATGAGAGTTTGGAGGGTAGAGATTCGTAAGAAATAAAG GGAAGCCAAAAGAAGGGAGATAAGGAGTTTGATTAGTTAGATGGGATTAGAAATAGGAGTGGGAGCCTAGCTGAAATTTGGGGAGAAGGGCAGAAGGTGC GGTATGAAGATTTTTTAGCTTTCGGAACTGAGCTAATAAAGAGGAATCCCTTTGTGTAAATGAGAACAAGGGAAGAACAGGGGAAGTAGAAACTGCTTGA AGCGGAGAAGCAGCGCTGCAGAGGAGGGAGAAAACGGTGAAGGAAAGGTCCAAGTGTTCGTGGCGGCAGCCATGGCTTGATATCATGTAAATGAGAATAA ACAAGACGAAGGAGAGAGAGAGAGAACAAAGTTGAACAGTAACTCTGAAATGTATTAATGAATCAGTTAGTTACAATGAGTAAGTTGAGTTACTTATCTA GAGGCTACAAACTAACACTGAGTATAGGCTAACAATCTAGTGTACTCTCTAACAGCATTCAGAACTAACTAACAATATTAGTTAACTAAGTAACAACAAT ATAACAACTAATACAATATTCTAATACTTTGTCAGAGGGGAAGGGGAACCTTGGAATGAGCATTTTCTCCTATTCCTGCTCAGATCCAATCAGCCACAGT AGATTTTTTCTTTCTGTTTTCTGGCTTCTCAAGCTCTCTTGTTGGTTCATAAACACTTCCAAACTTTATTTGCTCTGAGGAATTTGTATTTCACTCGCTC ATCATCAATTTTCTTTAAGAGACATACCTAGGATGTGGTCACTTTGTGATTCTTGATGGTATGTTTTTTATATATTCTTATTTGCTGATACTAGATAAGT GATTAACTCTATGTTTAGAAGTAAGAAGGAAACATAGCTGTGGTCTGTAGGCAATAAAATAAGTTGGACTAGGAGTAAGGACACACACAGAGTAAGTTAA CATATAAATAAGGAGGAAACATATAGCTGAGGAGCATAAGCTTATCTAAAGTAGAAGTGGAGAAAATACATATCTAATATAAAGGGATAAATGTCACCCA AAAGTGAGCTTTAAATAATATTGACACATGTCACTGAATCAAAACATTGGTGTATTTGGGTCTGGGGGGTGCATATCATGATCTAGAGGTAGTTGATCAA AATAAACTTCATTCTTGAGGGGTCCTAAAGGCTAAAGTAGTGCATAAATTTTTATCGTGGGCTTTTGAACTCTAGCTGTGAGATTGATCCATTGATTTTC TTGCTTACATTTGTAGATTTTCTTCAGAAAGAGCATTCTTACATTTCAGCACTCTGTTTGGTCCTTGCATGAGTACCCAATCTGAAAATACGGGCTTTGT TACTTATCTTTTAGTGAGGCCTGTACAGGCTAAAGTTCATTGCTGACTGATCTATAAAGGAATGGCTTGCAACAACAAAAATTTCTCATTCATTTTTTAA GTTTCCAAGGAATTACTAGCCCAATAAAGCTTATGGTGATGAATACATGTTAATGGTCTTTTTTGCCTATATTTTAGATTTGCTTTTTTTTTACAATTGC GATTACAATGTGTAATAATATATATATATATATAATTGATGAAAAGATCAACACTTCGTGCATCTTAGATTTGGGAGGTCTTATGCAATTCAAGTCGATT GTTGAAATCTATGCTTAGAGAGTTAGAGTAATGTCAACTAGTTCTTGGTTTCTGGTGTAATACTTTTTCTTTTCTTTCTTGGTTGCTATATTCTTAACTT CTGGTTTTTCCAATGGCCCAGCTGAAACGGTAATATACAGAATATATTATTACGTTAATAGATCCGGCAATGGTCGTCTTACCCTGAGGGAGCTGAAGCG TGGAAACATAATTGATGCAATGCAGCACGCTGATGAAGAAGAAGACATCAACAAGGTTTTGAGGTACTTCTCTTATGAGCATTTTTATGTTATATACTGC AAATTTTGGGAGCTGGATACAGATCACGATTTCTTGATCGACAAAGAGAATCTTATCAGATATGGTAACCATGCGCTTACCTATCGAATCGTTGATAGAA TTTTTTCTCAGGTTTGTGTGGATTACATGTTGCTTTTTGTCTTGTGATTTAATTGTTTCTGTCTTCAACAGCAAAGTCTGCTCCTTCCTTTCTAACACAA GAAATGTCCGGTTTCATGTCCCTGTTTTTTTTAAGATACGGTTATTGAATGGTTTATTGAAGTTGCAGATTTTGACTTGATTCAGTATTATCCCAGGTTC CAAGAAAGTTTACCAGTAAGGTTGAGGGAAAGATGGGATATGAAGATTTTGTTTACTT BLAST |
| Tissue | pods |
| Gene name | LI_gene_187345; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_295280
| Blastp | Probable serine/threonine protein phosphatase 2A regulatory subunit B''gamma from Arabidopsis with 67.05% of identity |
|---|---|
| Blastx | Serine/threonine protein phosphatase 2A regulatory subunit B''beta from Arabidopsis with 66.28% of identity |
| Eggnog | Protein phosphatase 2, regulatory subunit B(ENOG410XRBK) |
| Kegg | Link to kegg annotations (AT5G28900) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019428390.1) |
| Pfam | - |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |