| Id Trinity | TRINITY_DN51781_c0_g1_i3 |
|---|---|
| Name Transcript | Ll_transcript_296102 |
| Sequence | GGGAGGAGAGAGAGTGTGAGAGATACAACCCAATCTCTCTCTTTTCTTCTCCTTTCATTCTCTCCATATTCATCCTTCATTTCTGCCTCAGGACCATGGT CTTGCTAGATCCAGTTCAGCATCCTCAAAGGTGAGTGAAGATCTTGAAGTTGATCAGATATTGTCATCAACTCTACTTGATGTCTCACTGCCTCAGTGTG AAGATATCAAAAGCTATGAAAATGTTCCGAGCCCAATTAAGACCGCTTATGCAAATGAGTTCAATAAGCACATTGATATCGTTGGAGATTTATCCATTGA CCAAACTACAATGCATAATTCAAATTGTTCTAGTCCTTCACCATGCATGGAAAAATCTATAGCCGTGCCCAATGGACTAGCACCTCGGCGCTGCAATATA TTCGGGCGAACCGCTGCAAGGAAGAACCTTTCCATGGAATGCGTTAATTATCCTGATGAAGATGAAGCTGAAATTGAGAGACTTGTAGCTGTGAAGACAG AACTGCAAAATCAAATTACAGAGGAGGTGAAGGAAAATACAAAGCTTCAATCTGATGTAGAAAAACGAAAGAAAGCTTTGCAAGAGCGTCGTCTTGCACT TGAGAGAGATGTGGCTAGACTACAAGAACAGTTGCAAAAGGAGAAGAGTTCTCGGGCAACTCTTGAAGCAGGACCCAAATTTCCTCAAAAACCCTTGTCT GATGTATCCAGTATTGACGAAAAGACCAAGGCAGATCTTGAGGAATTAGTGTTGATAGAAGTAGATCTTGCCAACTTAGAGCAGAAAATTAATGACCTTG GGGTGCGGCTTAATTTACAACTCGAGCGGAATTATGGATCTATATTGGATTGCTTCAATCAACCCCAACAGATATCAAGCCATGAAAGAAACCTGAAGAA TAAGCCAGATACTGAAGTCACATCCACTTTGCAATCTGAGAGGTCAATAAGTAAGGACACTTATTTTGCTGGAGCTGGAAGTTTGAGTGAGAGAAGGCCA GAGTCAAAGCCAAGACCTTCAACAAACAAACATCTACCTACATTCAAGAAATCCAGTACTAGGGGTGAGGGAGCAAATTCCAGTACTTCTACACTGACAA AACTGTCATCCAAACTAAACTTTTTGAAGGAGCGCCGTAATCTGGCTTCAAATGAAGGCAATGAGTCCCCGAAGCTGGAAAAAGTATCTGAACTTCTGCT ACCACTTCCATCCCCCAAGAAGTCTAAAGGATATGAGTTTCACCTACCACCTCCATCCCCGAGTAAGTCTCGAGGATATGAATTTTACCTACCACTTCTA TCCCCGAAATCCAGTAAGTCTAGAGGATATGAAACTCATTCTCCAAGAGCTCCAGGCAAAGAAGGTGAATCACTCCAACATCCGGAGAAATTGAGAAAAT CGGATAGTCAACCAGGCCATCACCCAGATAGACAGAATCAACATCCACCGTTATACTTGAAAAGAGGAAAGTCAGAAGGCCACCATCACTCATGAGTCTT ATAATGTGATGATTAGAAGGTTACACAACAAAATCCACATGATAGGAAGCCATTGCAATCATTCAGCAGTGTCCATGTCCAAGTGTGGCATTGCTATGTC TTAGACAAGTGGTTTATGAAATGACAGTAAGAGAAGAATCCTTCCCTGATATGGTTAGCACAAAGGGCTATTTGTAAAAGAAGCATCACACCATTTACCC CAAAATGCAACATAAACCATCCCCATGACATAAACCAAGCTATATGTAACATAAAACATGCTGGTTTTTGCTGACTCCAAGCATGTTGGTCTTGTTGTTA TTACATTATTACCCTATTGGTTAACTGCAACAATGTTGAGTTGCTTGGCCTAAGCTGGCAAAACATTTTGCAGATAAACCTTGCCCAAGTTTCTTTAGTA ATAAATTAGACGACCTCATGTACCCAAAAAAACTGGATATAATTCAGAGCCCCATTAAACTTATCAGCATTTCTAACTGGCAATATATATCAATATCCGG ATATAAAAAGAAGTGAAAATTAATGTCCACTATAGTTAAGGAG BLAST |
| Tissue | pods |
| Gene name | LI_gene_187557; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_296102
| Blastp | Rho GTPase-activating protein REN1 from Arabidopsis with 43.35% of identity |
|---|---|
| Blastx | Rho GTPase-activating protein REN1 from Arabidopsis with 43.35% of identity |
| Eggnog | rho GTPase activating protein(ENOG410XR4E) |
| Kegg | Link to kegg annotations (AT4G24580) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019462322.1) |
| Pfam | Leucine-zipper of ternary complex factor MIP1 (PF14389.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |