Ll_transcript_446478

• Id Trinity: TRINITY_DN51801_c2_g1_i1
• Name Transcript: Ll_transcript_446478
• Sequence: TCGTTTCTCTCTTTCAAATTTGTGTGAGTTTCTTAAACGTTGACTTCGGTTTATGTTTTTGTCTATTTGATTTGATTTGAGGTTGAAGTTGGTTTGGTTT AGTTGCAGAGATTGTGTTGTGTGTAAAGAAAGATATGGCAAGTCAAAGGGATTCTTCTAGAAGGAGTTTTTCATCTGCTAAGAGAACTTCTGAGTCTGGA GTGCCTCACTCTACCGCTCGAAAATCTTTCTCATCTTTACGCTCTCCTCTGTAGGATGGTTTTTCGATAATCACACTATTTCTTTATTGTTCCAAATCAG TATTCTTATCATCTGATTTTGTAATATATATGGTTGAATAATCTAAGTTTTAGAGGGTAGTTGGTTTAGAGATTTTTAAAAGGGTGGTTAGTGCACGAGT TCCGGTAGATGTAACAGTCTTACCTTCGCCGACGAATGTTTCCCGGACCTCCTGGTCATAAGGCAAGACAATCTCATGTTGTGGAGAGGCTCACCCTCTT TGGTTCAGATTATTGTTGCAAAAAATGGCACTGCTCCAAAACGAGGTGGAAGGTGTTCGGCAACTACTACTGAATTTTTTAAGCTAGAATTTTGGACATT GAAATTATCGGATAATGGTATTATTTTGGAAGCTAAATAAATGGAACACAGGCTTAGGGATTGTATGCGAGTTCAGTTTTGGAGGGGAAGAAAGAGAAAT AGGAAGCTTTGGAACATCTTAAAAGTGTATTTCATGGCTCTTAATTATCTTTCACATCATTCCCTTCCAAAACTCAATTCACAAACAAACTTTAAAGGAA AATGAGCCATGAAATACACTGGTAAGATGACTCTAAATACTGTCCTTGTCTTCCTTCCCGTTCAAACTTAACTCGCGAGCAGACCCTTTTGCACCAATCA TATTAGTTCCCCAAACCATAGACGGTGAACATTTGCCCAAAGTTCTTGCCTTGTGACATGGAAGTTACCGGTTGAAATCCAGAAACCTCTCCTACTTGGA TTGTGGTGTTTAGGCTGCACATTTATCTTTCCTAGACTCCATCGAGTGGGAACCTTATGAATTGTGGGTCTATTTTTTAGCTCCTGAAACTGTGTTATGG TCTATAAAGTGGTCCTCACATGAGTATTAATTTGAGTGTGCTTATAACATACTATGTAAGAGTTAATACGATTAATTTCGTAATCTCAGATATGACTTTG ACTAATTTAACCTGTCCTTACAATTCCAAGGACCAAATTGAAAGTAACACCTTCAAATTTTTATACTTTTTTTATCCTTTTTAATTAGATGGTATATTTT GTCAGGATTAAAACTCTTTCATCTGCCATACATCTTTTTCATTTCATATGCTCTGTTTTCAGTCTTAAAAGTTGTCTTGGAAAGGAAAGATAAAAGAAAA AGTTAAGGTTATACTGTACTAAAAGACTCATAATCATGTGAATATGAAATATTTTTATAGTAGCTATTTTTGCTGTCTTACAATGATTTTCCCTTTTAGA AGCAGATAGATTCTGGTTGTTTGATGCCGTAATTGCAAAAGTCAGTAAGTGTCAATGTCAAATAAATATGGGGTGTCAAAGTCTTGCCTAATTATTTGTT TACAATGATTTTAATAAAAAAACTATGACTTTGATGGTGTACTTTACCTGTTTGGGTTCAGTTTTTAGGCTTGTACCTATCAATTTCCAAAAACACACAA AGCAGAAATGTATTGAAATACTTCTGCTACTACAAAATAGTTTCTAGGCTTCTACCTATCAATTTCACTTATATGAACACTTTAGTGGAATATTTCATTG TTTCACCTCTCTTTTGTTTCTACTTAGTAAATGTATTTTTTATGCTATGAAATTCAGCCATCTACATCGAGCAATTCTTGTATGACATAGTTCATATTTA CTTTATAATTGTATTATGCACAAAACAAATGTGGACTGGTGAGTCCACAAAGTGTATATGGCATAAGCCTATGCATGAATTTCTCCATCTTCCTCCTTAA AGTTTTGATTGAGTTGTCAGTTTCAGAGTTATATGGTCATGCCATTGCTATCTGTATAGGGAGCTGCACATTATTAAATCACACATTTCATAACAGATTG AGGGTCAGCCTTGGTGCAATGGTAAGGTTGCTTGTCTTTTGACCCGGAGGTCATGGGTTTAAATACTGGAAAAACCTCTTCGCTTGTGAGGCTAAGGTTG TGTATATCTATCCTCCCTAAATCCATTTAGGTAGGAGCCTCGTGCATTGGGCCGACTTATACTTCATAATAGATTAGTTGTTGTCTAAAAAGTTTTACTA GAGAAGCTTGATGCGTTTAATGAGTTGTTATTAAATGCATTTAGTTAGATGATGCCTTGTTTCTATTTGGAAATTGGAATTCGATCAGGGGAATGACGGG AGAGCGAACAGTGAAATCATTGCGACTTTTAAAGGCCTTGACAGTACCTGACACAGCGACTATTTATGAAGCTTGCCGTCGGATGGCTGCCCGTAGAGTA GATGCTCTATTACTAACTGATTTAAATGGCATGCTCTGTGGTATCCTCACAGACAAGGACATAGTAACAAGAGTTATTGCTCGAGATATTAATCTTGAAG AGACATCTGTTTCCAAGGTTATGACTAAGAATCCAACATTTGTCCTTTCTGAAAGTCTTGCTGTTGAAGCTCTGCAAAAGATGGTTCAAGGGAAATTTAG ACATTTACCTGTGGTGGAGAATGGAGAAGTTGTTGCCTTACTCGACATAGCAAAGTGTTTATATGATGCCATAGCCCGTATGGAAAGGGCAGCTGAGAAA GGAAATGCAATTGCAGCAGCTGTTGAAGGTGTTGAAAAACAATGGGGATCATCTGCTTCAGTCTCCAATTTATCATTCATTGAGACTCTCCGGGAGCAGA TATTCAAGCCAGCTTTGTCTACAATCATTCCCGATAATTCAAAGGTAGTAACAGTTTCACCAGAAGACTCAGTTTTGACAACAACAAAGAAGATGCTTGA ACTTCATGCAAGTTCCGCTATTGTGACAGTTGACAACAAACCTCGTGGCATCCTTACTTCAAAGGATATCTTGATGCGGGTAATCGCGCAGAGGCTTCCC CTGGAATCAACTCCTGTTGAGAAGGTCATGACTCCAAATCCCGAATGTGCAGTCATTGATACATCTATTGTTGATGCACTTCACACTATGCATGATGGGA AATTTTTGCATCTTCCTGTGGTTGATAGAGATGGTAGTGTAGTTGCTGTGGTGGATGTGATTCATGTCACTCATGCTGCGGTAACGACAGTAATTCAGGT TGGCAACAATGAAGCTGCCACCTCCATGATGCAGAGATTTTGGGATTCAGCCATGGTCTCAACTCTTAATGATGATGAGGATGAAACACGAAGTGAGAAT TCCTTGAAAATGGCTTCTGAGGGAGGAGAAACAGGGAGAT
• Tissue: pods
• Gene name: LI_gene_187700;
• Additional information: details;

Expression of Ll_transcript_446478

FPKM

• PAB: 3.3
• PNAB: 0.2
• PS1: 0.8
• PS2: 0
• PS3: 1.1
• PW1: 0.6
• PW2: 0
• PW3: 0.4

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_446478

• Blastp: CBS domain-containing protein CBSCBSPB5 from Arabidopsis with 71.88% of identity
• Blastx: CBS domain-containing protein CBSCBSPB1 from Arabidopsis with 71.1% of identity
• Eggnog: Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth (By similarity)(COG0517)
• Kegg: Link to kegg annotations (AT5G50530)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019419084.1)
• Pfam: CBS domain (PF00571.27)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;