Id Trinity | TRINITY_DN51812_c1_g1_i23 |
---|---|
Name Transcript | Ll_transcript_446179 |
Sequence | CCAACAGTGGGTGAACAAGTATGACAGGTTGATGCCAACCCCTAATATCATCCATCCACCTTACTTAAAAACTATTAAAGTAGTTTTAGTGGGAAGGAGT AGTAGTGGGCCTATCTTTTTCCCTTCCATCCTGGAAAAAAGCAAAGTGACTGCAATTTAGTGCACATCTTTTAAACCCTCCTTACTTACAATATCCCAAA TGAGCAAGAAAAGCATAAAAAGCCAGACTTTCCTCAAAACCAGGTTTATGATCATTAACTTTCATCTTTCTTTCACTCTCATTCATAACTAAAAGAAGAA AAAAAAAGAACTTAATGTAGCTGATCTGATACTATGTTTGAGATTTAGGTTCACAGAGTGGGGCTTCATTGGCTCTCACAGTTACTTATCAGGTATTGTA TATGTTGGGAGACATAACAACAGGACCTGACTATTGTTTCACGCATTGGCTCCAATTTGTTTGTAAACGCACTTCTTCTATGTATCATCGATTTTCCATG CCTTCTAGCCCGACAAAATCTGTTGAGGATGGAAGGAGTGATCAACTATCTGAACAAACAGAAATTAGTTTATGGGAGAGGCTTGGCAGAGCAGAAATGT TAGACGTCGAATCGAGCTCATTTTCTTGGGACCGGCTATCTTCACTATACCATACTGAACACAGTAGCAGCAATGACCATTCCGAGGATGAAATGAACAG AGCTCTTGAGGTTCATTGTATTCTATGTTCATAATGTTATTCGAAGAAGTCAGGATCATACATACACTAGGGCTTTTGAAGTTGAGGAGTTAGTATACAA ACGGGGTTGATGTTAATAATTGTTAGGCTATTACAAGAAGTCAAGAACATATTCATTAGGATTTAGTGTATATAAAGAATAATCATTTCTCTCCGGTTTA GCTTCAGTCCAATATATTTTCGCTTTTGGCATTTCAGTGTGCTACTTTAACACATATCCTGTTAATTCATTCATTGAGTGTCAAGAGCATTTGTTATGTA TGTCGGGTTTATTATTTTTTGTCAATGTTCTAGTAATCTTGTGAGACTTGGTGCAACGGTAAGGTTGTTTGCCTTGTGTTACGGGTTCAAATCCTAGAAA CAACTTCTTCGCTTGCAAGGGTAAGACTGCCTACATCTACCCTCCTCAAATCCCACTAGGTGGGATCTCGTGCATTGGGCCGGTCTAATGTTCTAGTAAT TCTGTTGTATTTTACCGAATTAGAACGGAAACGTGTACATGAACTGTTTATTTTCTTCTGCCTCAGTTACTTGTCAATTGTGTGCACATAGGTAACTGTA AATTCTGGAGGGGTTGTCTTCTTTGCCTTTTTCAATGGCCTGGGGTATGATGATGGTTTTCCAAAAGAAGCAGCAGCTGTTATAAAGATATCATCGTCAA GAATGGCAACACAGTCTGAACGCCTTGGGTATGAATTTGCCAAGTGGTTAGGAGTCCCAACTCCACAGGCTAGAGTCATTCACAACACCACTTTGGAATG GCTCCAAATAAAGGAAGCTGCAGAAAAAGCAAGAGATGCAGCAAGTTCTAAGGGTGATGACATTGGTGAAATGACATGCTTTGAACTTTTGGAAGCACTT GAGCTTAGCCGATGTCTCCTTTTTATGAGTTATGTACATGGTTCGCCTTTGCTTGAAAGCTCTTGTGCATTTGATTCACGGGAGTCGGCAGAAAGAACAT CAGCAGCCCTTGGCAGGGTAATGATGTTGGACCTTGTTATCAGAAATGAAGATAGACTTCCTTGTCGTCAACTAAGATGGCGTGGGAATTCTGCAAATTT GTTGCTGGCTGAAAATATGATCTCTGCAAATACAGACACACTAGGAGAGGCTTTTGATTCTGCAATGAACCAATACAAGCCGAGGGTGACTAGGGCACTT CAAAATCAAAGGTCAACTTCTGATAGCAGATTGAGTTCTCATAATCCTGTGTTGGCATCAGCAGGCTCTGATCTTTCAGATATCAAAGAATCACCAATAT CTGCTGACATGAGCTTTAAAGGCCAAACATCAAGAGAATCATTGCGTACTGACTTTAACATTGTGGCTATTGATTCTGGTGTTCCTCGCCGACCCCCTGC TGGAAAACGTGCAAATGATCAGGTTAACTATCCCAAGTTGGTTGAGTTGCTACTCAATAGTTCTGAGTTTTCCTCTAACCTGTTACATGATATAACTGGA GGAAGATTAGGATTTCCTCCGCCAGAAGACATAAATACAACAACTGATATACATGTAAGTCATGTAACATCAGTAGTTCATGAGTTCTGTGGTGGTTTTC GTGCTGCTCTTAGGGACCTGCAGGGATTCCATATATTCCTTCTCACACTTCATCAAAAACTCGATAACTTGTTAAGGTTATTTATGAAAATTATAAGCAA AATATCGTTGGGGGAATCTGAAAAGGAGGATTCAGTGGTTCCTGACTCACCCTCTCTGGCTGCTATTTTCAGTTGTCCCCCTCCAATAAGTAAGGAGAGG TTTTCTAATTATAACCATCAAGATTTTAGTGATTCAGAATCACAGAGAAGCGCTCCAAGGGAATCATCATCTTCTGGCAATAGAGATTGTTGTGACTCTG CTTCTTCTATGTCAAGAGAAAGTTGGCATGGAAAATCACTTCGTAGTCTCTGCTTGACAACTAAACTTCGCGACTTTCATAAATTTGCCAAGGTTGATGC AGAATCTAATAAAGAATTGGAACAATGGAATGAAATGCTTAAAAATGATGCCATCAAGTTATGCCTGGAGAACAATTTCAACTCCGGATTTTTTGAGGGT AGTGATAACAACAGTGTTATTGATGCATATGAACTGAAGGTTAGACTTGAACATATCCTTGAAAGGATTGCATTTATATCTGAAGCTGCAAGTACAGAGA GACCATCTATTGTTACAAATACTCTGCTCATTGGTGGAGCACTGGCTGCAAGATCTGTATACACACTGCAACACTTAGGGATCACACATATATTGTGTTT GTGTACTAATGAAATTGGACAGTCAGATTCTCAGTTTCCTGATCTATTTGAATACAAAAATTTCTACGTGTGTGACGATGAAGATTCTAACATCAGTGAT ATATTTAAAGAAGCTTGCGATTTTATA BLAST |
Tissue | pods |
Gene name | LI_gene_187793; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_446179
Blastp | Dual specificity protein phosphatase PHS1 from Arabidopsis with 61.93% of identity |
---|---|
Blastx | Dual specificity protein phosphatase PHS1 from Arabidopsis with 62.1% of identity |
Eggnog | dual specificity phosphatase(COG2453) |
Kegg | Link to kegg annotations (AT5G23720) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019437201.1) |
Pfam | Actin-fragmin kinase, catalytic (PF09192.9) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |