Id Trinity | TRINITY_DN51821_c0_g1_i6 |
---|---|
Name Transcript | Ll_transcript_445818 |
Sequence | TTTCTCTTTTTTTCGAAAAATATATATAAGATTTGGTTTTTCACATTTGATGATGGTGTAGACTTGAAAGAGGAGACCATAGCAACACAGCAATATATCA TATCATATATTGAAATGTGAAATTTTGTGAATGAAAGATTCTGCAATCAAAATTATTCATTCAATTTCTCTCTTTCAAATTTCACCATTCAATTCTTTCA CTTTCATTCCAAATTTCGTTCATCTCAATTTCACAATCCCTTAATCTCAATAGTGCTCTGAATTGAGTGAGTTAGGTTTAGTTATTTTCTCAATTGAAGA AAAAAAAGCATGTCGAATCAGGTTTCAGTGAAAGACCTTGTTGAAGAAGCCAAGAAACGTGTTGTAATTCTTCTTGTTTGCGTTGTTGGTCTCTCATATC TCATGTCACTGACAAGCTCGTCAGTTTGGGTCAACTTGCCTGCTGCAGTTTCCTTAATCATCATTCTCCGCTATTTATCACTAGATTTTGAAATGAAGAG AAAAGCTGCTGCATATAACAATAAAGCAAGCTCCACTAGTGTTCAGTCATCGAAGAAGCCTCCTGAAAACTCTGAAGTCGTTGCTAAGTTTGACTGGAGA GCAAAAGTTAATTCTCCTGTTGTTGAGGATGCAATTGATCACTTCACTAGACATTTAGTTTCTGAGTGGGTGACAGACCTGTGGTACTCTCGCATAACTC CAGACAAAGAGGGGCCTGAGGAGTTGGTTCAAATAATAAATGGAGTTCTTGGGGAGATTTCAGGACGCATGCGAAATATAAATTTGATTGATTTTTTGAT AAGGGATCTTATTAACCTCATTTGCACACACTTGGAGCTGTTTCGTGCTGCTCACTCAAAGGTTAAAAAACAACATAAAGGTTCACTAACAATTGAATGT CGAGATACAGAACTAAAACTTGTCTTGGCTGCTGAGAACAAATTGCATCCTGCTTTATTTTCTGCTGAAGCTGAGCATAAGGTTTTGAAGCATGTGGTGA ATGGTCTTATGTCTGTCACTTTCAAGTCTGGGGATTTGCAGTGTTCTTTCTTTCGATATACTGGCAGGGAGCTTCTTGCATGTGCTGTAATGAGACCTGT CCTAAACTTAGCCAATCCAAGATTTATTAATGAAAGGATTGAATCTGTAGTAGTTAATAAGACCAAGATTAATAAGGGGGCTTCTGCGTCTCCAAAAGCA TCCGACACTAAAACAGATGAGTCGCAGATTCCATCTGACCAATTTTCCGAGTGTTTAGATCCTTCTGCTAATGGTGTTGAACTTGTGATGCTAAGAAATG ATCAATCAAAAAATGCAAAAAAATCATCTGCACGAAATAATCCCAATCATAATTTTAATAAAGATCCATTACTTGCAATTGATGCTCGTTCTTCTCGTTC ATGGACATCATTGCCTGCAAACTCTCATGCTAATAATGACCAAGGTATTCAACAGCATCACTCAGGAGGAGAGTGGGGAGATATCTTAGATGTCATATCT CGCAGAAAGACCCAAGCCCTTGCTCCAGAGCATTTTGAGAATGTGTGGACGAAGGGTAAAAATTACAAGAAAAAGGATGGTAAGAAACAGTCAAATGAGC AAGTCTCACCACATCCTGTTGTAGGAAAATCGCTGAAGGTAGATCATATGAAGGCTACTGGACCCAAGGAAAAGGACAGAACTCCCAAGCTTAATCCCTC TACGGGAAGCCACATTAATTCTGAAAATGTAGACTTCCATGCAGACAAGAATCGACCAAGTTCTCTAGTTACCTTATATAAAGATGATGAGCACTATGAC ATGCATATGCAGATGGGTGAATCAGAGAGCAGTACTTCTTTTACGTCTGAAGATGATGAAACTACTACTGTCACTGGTCTTGATTCCCCTGTAACTAAGG TTTGGGATGGAAGAAGTAATACAAAACAGGCTGTTACTTACGTTCATCACCCACTTGAAAATTTTGATAATCATGGGAGAAAAAAGAGGAATAAGAACCG CTCTCGCTATCCGACACTATCCGTAACCCAATCGGGGAGTAAAAGGTCTAGACCAAGTGGTCATGACATACATACGTGGCAGGAAGTTGAGAGGACAAGG TTTTTATCAGGAGATGGTCAAGACATACTTAGTTCTTCAAGATCACATGTAAATTCTGAGGACTCTAGTAATGATGATGATTATACTGGAAGTTTGGGTA GAATTTATAGTGGAGCAACAGCCTCTTCTTCCACATCCTCAATTTCTAAATCAGAATCTCATAGTTTGGCTGTTAATCCCCTAAAAAGTTCTTCAGTATT AGATTCTTTTTTCAAGTTGAAATGTGAGGTCTTAGGTGCAAGTATTGTGAAGAGTGGTTCAAAAACATTTGCTGTTTACTCCATATCCGTAACAGATATA AACAATAACACCTGGTCAATTAAAAGAAGGTTTCGTCATTTTGAGGAACTACATCGACGCCTGAAAGAGTTCCCTGAGTATAATCTTCATTTGCCTCCAA AACATTTTCTGTCAACAGGTTTAGATATCACAGTCATTCAAGAGCGGTGTGAATTGCTGGATAAATATTTGAAGCAACTTATGCAGATGCCAATAGTTTC AGAATCAATTGAAGTATGGGACTTTCTGAGTGTTGACTCTCAGACATACATATTCTCGAATTCATTTTCTATCATGGAGACATTATCAGTTGGCATGGAT GCTAAACCCTCCGAGAAGACTAAAATTGCTTCCAATTTTTCTGGATCTGCAAGTGACACTTCTGCCTCTCGAAGAGAAAACTATAGCTCTGGAAGTAAAG AGGCTGTTTTGCAAACAAGAAATAATGTTGTGGTTGATAGGTTAAGGTCAAAAGTAAATGGCATGTCTCCTTCTCTACCAGTAAAGAATGCACAGGAATC TAGAAAGTCATTGGAGAGTTCTGGTGGTAATACAGATATTAGAGTTTCTCCCAATAACTTGGAGCAGACAGTGAAAGTAAGGGATAGTTTAGACAAGGTG TCTGATTTGCACCATGATACTTCTGATACTCTTCCAGCAGAGTGGGTACCACCAAATTTGAGTGTACCAATACTGGATCTGGTTGATGTTATCCTCAATC TTCAAGATGGTGGATGGATTAGGCGGAAGGCTTTTTGGGTTGCTAAACAAATCTTACAATTAGGAATGGGTGATGCCTTTGATGATTGGTTAATAGATAA AATCCAGCTTCTCCGTAAGGGATCAGTAGTTGCTTCAGGGGTTGAGCGAGTTGAGCGATTCTAATTACTGTGATGGGGCAGAATGCTGTGTACAGTGATT AGATAAGTGTATGATGTACTGATGAGGTATTGTGACTGCAACTTCAATAGATACTCTGGCCTGATGGAATATTCTTAACCAAGCATCCAAAGCGACGACC ACCACCGACACATTCTACTTCATCTCAGAGCTCATCTCAAAGCCATCAATCCGCAGAAGTATCTTCCCCAAAGAAGGTTGATGAGCAGCAACGGGAGGCA GATCGGCGTGCGAAGCTTGTCTATGAGCTAATGATTGATCGAGCACCACCAGCAATTGTAGGCCTCGTTGGTCGAAAGGAGTATGAGCAGTGTGCTAAGG ATCTATATTTTTTCCTTCAGTCATCTGTTTGCTTGAAGCAGCTAGCTTTCGACCTCCTTGAGCTGCTGCTGTTGTCCGCATTTCCGGAACTGGAAGATGT ATTCAAGCAACTGCATGAAGAAAAACACAAATTTGGTGAGTTCAGAGCAAATTGAATATTATAATTTTTTAGCTGAGGCAAGGAGAGGTTCAAGGGTGTG GGTAGTTCTGTATTCCAAGTTCACATCTTTTTGAATGCTCTGGTTGCACCATTCGTCTTTTCGCGTCCATCTGTTTCGGCCTGTTGATTAGGTGAAGGCA ATTCAACTTTTCCGTTTACAAAGTTTGGTTTTGTAATTAAATTTTGCATCAAGTGCGAGCCTTGTGCACTATATCGCCCTTTTAGGGAGTGTAAATTCTG AGATTAATGCAGTTACTTTAACATTCTTTTTTTTCTAACCATTTTCTTTCTGGATGCTGGGTTTCTTGGTTCAGGTTTGGAGATTCTTGATAATAGCATG GGTCTCTCTTTCTAAGTTTTTGGTTGAAAGTTAGGGTTTTTATTTTAGTTATGG BLAST |
Tissue | pods |
Gene name | LI_gene_187869; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_445818
Blastp | Sorting nexin-16 from Rattus with 29.27% of identity |
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Blastx | Sorting nexin-13 from Mus with 22.46% of identity |
Eggnog | sorting nexin 16(ENOG410Z8KU) |
Kegg | Link to kegg annotations (64088) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019431809.1) |
Pfam | PXA domain (PF02194.14) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |