Id Trinity | TRINITY_DN51824_c0_g1_i13 |
---|---|
Name Transcript | Ll_transcript_446292 |
Sequence | AGAAAAAATGCATGACCATAACTCATAGATCTCAAATTTGATTTAAGAAATAATTTCTAATATCAAACAATGTTTAAGCACGAGTTACCAACAAAAAATT ATTAAAAATGTATAAGACTTGAACCTTGAAATCACTACTTTGCTTAACAAAAACTAAAAGAAGAAAAGATAAAGTGAAGTTGTTCATGGGAGGCACAACT TCATGCAATTTGCACGATTTGGTAATATTTATAAAGTTGCACCATATGGGTAATTTTTTTTAGTCAATGTACATACACAAGTCGTGTAAATTTGTTTATA CTTATTTAATGGCGGCTAAAGAGTCTAGGACGCAAGTTCCATTTTAATAACACAGAAAAGTAGGAAGATCTGTTGATTATACTGTATAACAACACCATAT TGAGTTTCTGTCTTCAACTTTTGTAGATCTGCTTAGCTTTTCTGGGTTGTAAGAACATGTTTTTGCGTTGTAAAAGTGGTTGTAAAAGCACTTAAAAAGG TAAACGTGTTTTTATTATTTAAGAGTGAACGTGTTTTAAGCAGCACCAGTTGTTTCCTACCTTCACACCCTTTTATTTCATCCACTTGACCCTTCTCTAT TCTTCAACCAAGTTCTCTTTTTTCTCTTGTCTTCAAAATACAACTTGGCTTGTTAACAATAAAGTTGTTCACTTTTAGTTTCTTGTGATAGTTATTGCTC AATAAATGGCACTTCTTCATTCTGCTTAATAAACAACCATGTTTCATTGCTTTCTTTCAGGTGGCAGAGAATAAACAATAGTGGTTCCTTGGTTGTAACA TAGCTGAAGAAGTTTTCTGTTGTGTGCATAAACATGCGATCTGAAACTTCAACTTGGGTCACTTCCCTTTCATGTTCAATCTCAGGAGATGTTTCATTTG TTTCAAATCTACCTCATTGGCTTAGATTCATTTTCCTCTCTCCATGCCCTCAGAGAGCACTTTTCTCTGCTGTGGATGTCTTACTCTTGTTAACTTTCTT AGTGTTTGCACTCACAAAGCTATATTCTAGGTTCACTTCTAATGAGAACAACCACGCAGAACTCAACAAGCCCCTTATAAGAAATAGAGAAGCTTCTGTC ACAACAACAATATGGTTTAAGCTAACAATAACTGCAACATCTGTTTTGGCCATATTGTACACTGTTGCTGGTATTTTGGTTTTTACCAGTTCAACACAGG TGACATGGAAGGTGATTGATGGAGTGTTTTGGTTAGTTCAGGCCATAACACAAGTTATACTTGTAATCTTGATTATTCATGAGAAAAGATTTGAAGCTGT TGCACATCCTTTATCCCTTAGGATTTATTGGATTGCAAATTTTATCATTGTTGCTTTGTTCACAGCTTCTGGTGTTATTCGTTTTGTCTCTGTGGACGTG GAGGAAACCAAACACTTCAGCTTCTTGGTGGATGACATAGCTTCTTTCATTTCTCTCCCTTTGTCACTTTTTCTGCTATTTGTTGCAGTTAAAGGGTCCA CTGGGATTAAGTCCAGCAACGACGATTCGCGACCGCTTAATGGTGATAATACCAAGCTATATGATGATGTTACTGGGAGAAAATCCAGTGTTACTGGCTT TGCCTCAGCTTCTTTAATATCCAAGGCCTTTTGGATTTGGATAAACCCCTTATTGAGCAAAGGGTACAAGGCACCACTGAAGATTGATGATGTTCCATAC CTTTCTCCACTGCATAGAGCTGAGAGGATGTCAGTGATCTTTGAATCAAAATGGCCTAAACCAGATGAGAGATCAAAGCATCCGGTTCGAACCACATTGC TTCGGGTGTTCTGGAGGGAAATAGCCTTCACTGCCTTCCTTGCTGTTATTAGGCTAAGTGTCGTGTTTGTAGGGCCTATTCTCTTACAGAGTTTTGTTGA TTTCACAGCCGGGAAGGGAAGCTCTCCATATGAAGGATACTACCTAGTGTTGATTCTCCTATGTGCCAAATTTGTAGAAGTTTTGGCAACTCACCATTTC AACTTCAACTCTCAGAAGCTTGGAATGCTTATCAGATGCACTCTCATCACTTCCTTGTACAAGAAGGGGCTGAGGCTAACATGTTCAGCTCGGCAGGACC ATGGTGTTGGGCCTATTGTGAATTACATGGCTGTTGATGCTCAACAACTCTCTGATATGATGCTGCAGCTACATGCTGTGTGGATGATGCCATTTCAACT TGGTATTGGCTTAATATTGCTGTACAATTGTTTAGGTGCAGCAACAGTTACAGCTTTGATTGGTCTTCTTGGTATTATTGGGTTCATTTTGTTAAGTACT GGACAAAACAAAAGGTACCAATTTAATGCAATGATAAAGCGTGACTCGAGAATGAAAGCTGTGAATGAGATGCTCAATTACATGCGTGTGATCAAGTTCC AGGCATGGGAAGAGCATTTCAACCGCAGAATTCAGGGTTTCCGTGAGTCAGAGTTCGGATGGTTTTCCAAGTTTATGTACTCAGTTTCTGGCAATATTGT TGTATTGTGGAGTGCACCGTTACTGATATCAACTCTCACATTTGGCACCGCCATTTTGCTTGGAGTTTCACTTGATGCTGGGACAGTTTTCACCACCACA ACCGTGTTTAAGATCCTGCAGGAGCCTATTAGGACCTTCCCACAGTCTATGATATCTCTTGCACAAGCAATGGTGTCACTGGGAAGGTTAGATAAGTACA TGTCTAGCAGGGAATTATCAGAAGATTCAGTTGAGAGAGTGAGGGATTGTGACGGCCAAACTGCTGTGGAGGTCAAAGATGGTACCTTTAGTTGGGATGA TGATTCTCAACAGCAGGACTTGAAACATATTAATTTGGATATCAATAAGGGTGAGCTTACTGCTATAGTTGGAACTGTAGGGTCAGGAAAGTCTTCCCTC CTTGCATCAATACTTGGTGAGATGCACAAAATTTATGGAAAGGTTCGTGTTTGTGGGAGTACATCTTATGTTGCACAAACATCATGGATTCAAAATGGGA CCATTGAAGAAAACATTCTCTTTGGATTGCCCATGAACAGACAGAAGTACAATGAAGTTGTCAGGGTTTGTTGCTTAGAGAAAGACCTGGAAATGATGGA GTATGGAGATCAGACAGAGATCGGAGAGCGTGGCATCAATCTAAGTGGGGGCCAGAAGCAGCGTATACAACTTGCCAGGGCTGTATATCAAGACTGTGAT ATATATCTTCTCGACGATGTTTTCAGTGCTGTTGATGCACATACCGGCTCTGAAATATTTAAGGAATGTGTGAGAGGAGCTCTAAAAGGCAAGACCATTA TTCTTGTCACACACCAAGTAGACTTCCTACATAATGTGGATCGTATTGTGGTGATGAAGGATGGAATGATTGCCCAATCAGGGAAGTACGATGATCTACT CCATTCCGGATTGGATTTTTCTGCTCTTGTAGCTGCGCATGAGACCTCTATGGAACTAGTAGAACAAGGTGCTGCAGGTGAAAATTTTGACAAACCAATT AAATCTCCAAAGGCAGCCCCTAATCATAGAGAAACCAACGGCGAAAGCAATTCTGTTGACCAGCCCAAGTCTAACAAAGAAAATTCTAAACTCATCAAAG AAGAGGAGAGAGAAACTGGGCAAGTAAGCTTACATATCTATAAACTATACTGCACTGAGGCTTTTGGATGGTGGGGTGTTACAGCAGTGGTCCTTTTTTC TGTGTTGTGGCAAGCATCTATGATGGCAAGTGATTATTGGCTGGCATATGAAACCTCAGCAACGCGTGCTGAACTGTTTGATCCTTCTGTGTTTATTTCC ATCTACGCGATTATTGCTGTAGTTTCACTTATTTTGATCGTTCTAAGAACCTACTCTGTCACTATCGTGGGGCTAAAGACAGCACAGCTTTTCTTCTCAC AAATTCTTAATAGCATCTTACATGCACCCATGTCTTTCTTCGACACAACTCCATCAGGGAGAATTCTAAGCAGGGCATCTACTGATCAGACCAATGTTGA TATCTTCATCCCCCTGTTCATGAACTTTGCTTTGGCCATGTACATCACAGTAGTCAGCATCATCATAATCACATGTCAAAATTCTTGGCCAACAACTTTC TTGCTAATTCCTCTTATTTGGTTGAACGTTTGGTACCGGCGCTACTATCTTGCTTCATCTCGTGAATTGACTCGTCTCGATTCAATCACAAAAGCACCTG TCATTCATCATTTCTCTGAAAGCATTTCTGGGGTCATGACAATCCGTGCATTCAAAAAGCAGAAAGAATTTAGTGATGAAAATGTTAAACGGGTTAATGA TAATTTGCGAATGGATTTCCACAACTTCAGTTCGAATGAGTGGTTGGGTTTTCGCTTAGAATTGCTTGGAAGCTTAATGTTTTGCTTTTCTACTTTATTC ATGATCATGTTACCCAGCAGCATCATAAAACCAGGTAAACTAACGATAAAAGGATTTATAAAACTGTTGCCCTGTCTTGATCCTTTGAAAAACATATCAT GTTTTATCTTTCAAAGTAGTCCTCATCATACACTAGATCTTGGATAATGAATTGATTACTAGCATATATGGTGGAGCAGTGATATTACTATATTGCAGTA AAAAATTTATTGAGACAATAAATTGATTGTGCTGTTCTGCTTGATGTAGAAAATGTTGGTTTAGCACTCTCTTACGGAATATCCTTAAATTCGGTGCTGT TCTTTGCTGTATACATGAGCTGTTTCATTGAAAACAAAATGGTATCTGTTGAGAGGATAAAGCAGTTCACAAATATTCCATCAGAATCAGCATGGAAAAT TGAAGATCGTTCTCCTCCTGCAAATTGGCCCGGTCATGGCAATGTTGATATCAAGGACTTGCAGGTCAGATATCGTCCAAACACTCCTCTTGTTCTTAAA GGCATTACTTTAAGCATTAGTGGAGGAGAGAAGATTGGTGTTGTTGGTCGAACAGGAAGTGGAAAATCAACTTTGATTCAAGTTTTCTTCAGGCTGGTGG AACCTACAGGAGGGAAAATAATCATTGACGGCATTGACATATCCGTCTTAGGACTTCATGATCTTCGATCTCGGTTTGGTATCATCCCTCAGGAGCCTGT CCTTTTTGAAGGAACTGTCAGAAGTAACATTGATCCAACTGGACAGTATACAGAAGAAGAGATATGGAGGAGTCTCGAACGTTGTCAACTAAAAGATGTA GTGGCTGCTAAGGCTGAGAAACTCGATGCTTTAGTGGTTGATAATGGAGATAACTGGAGTGTGGGGCAGAGGCAGCTACTTTGTTTAGGGCGGGTTATGC TTAAGCAAAGTGGGCTATTGTTCATGGATGAGGCAACAGCTTCTGTTGATTCTCAAACTGATGCTGTAATTCAGAGGATCATCCGAGAGGACTTCGCGTC GCGCACCATCATCAGCATTGCTCACAGAATACCAACAGTCATGGACTGCAATAGAGTACTAGTTGTTGATGCAGGGCGAGCTAAAGAATTCGACAAGCCC TCTAACTTGCTTCAAAGGCCATCGCTCTTCGGTGCTCTAGTTCAAGAGTATGCCAACCGATCAAATGAACTATAAGAAACTCTTCTGTTTCTCTTGACAC ACAAGACTAGTGCAGAGATGAGATGTTTTTATCACTGGTGTCTTATTTGACAAGTGAAGCCTGGGCAACTCTTGTAATTGGAATCCTACTAGTTATACTT CACATTTTGGCCATATCTGAGTTTGTATTGAAGAATGTAGGATAGTAGATCCTAATTTTTATTTTGTACTACTTACCAAGGGTAATAAGTTGCGGAGGAA ATGCACTGCTTTTTACACTGTCAGCATCATCATTCGCGTGTTAATTATTATTATTTCTTGAGTAAAATAAGAAATGAAAGTGATACACATAAATGATGAT TGACCATGCACCAAACTTCACTAGCAGTGCATATATATTATTGCAGCAATCCCATTTCACTGTACTGAACAAGTATTTTTGCACCATTAATATAGCTACT CTAGACCTCCAATTGAGCTTTTGTTTGGTTATATCAAAATGGTTGTAATATTTATTATTTTACTATTATTTATAATTATTATTCTTAATAGGCAAAATCA CACATTGATCTCAGGTTAAAAAAATAACCAGTTTTTTCATGTGAAAAGCTATTGACACAATGAAAGAGGATATAAACTCATGCTAACACTTTATG BLAST |
Tissue | pods |
Gene name | LI_gene_187878; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_446292
Blastp | ABC transporter C family member 4 from Arabidopsis with 65.32% of identity |
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Blastx | ABC transporter C family member 4 from Arabidopsis with 65.19% of identity |
Eggnog | (ABC) transporter(COG1132) |
Kegg | Link to kegg annotations (AT2G47800) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019441762.1) |
Pfam | ABC transporter transmembrane region (PF00664.22) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |