Id Trinity | TRINITY_DN51837_c0_g1_i17 |
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Name Transcript | Ll_transcript_448242 |
Sequence | CCGGTTTATCATAAAACCTTAAACCCTTCTTCTAGATGCTTCTCTTCTCTCATAGCTTCACTTCAAAAGGAACCCTCCAACGTTAGCATCAACCACCTTC ATTGTTTCTCTGCAAATTCTTCACTGTGTTTCTCACTTACCCCATTTCTTCATTACTCTCAATTCAATCAACTTCATCATGTACCGTTTTGCCACTTCCC TTGCCTCCAAAGCTCGGATTTCTAGGAGCAGCAGTCAACAGGTTGGAAGTAGGTTGAATTGGAGCAGGAATTATGCTGCCAAAGAAATTAAATTCGGCGT GGAGGCTCGGGCTCTGATGCTTAAGGGTGTCGAAGAGCTTGCCGATGCTGTCAAAGTAACCATGGGTCCTAAGGGGCGTAATGTGGTGATTGAGCAAAGT TGGGGTGCCCCTAAAGTGACAAAAGATGGAGTAACTGTTGCGAAGAGCATTGAATTCAATGATAAAATTAAGAATATTGGTGCCAGTCTTGTAAAGCAAG TTGCAAATGCTACCAATGATGTTGCTGGTGATGGAACCACATGTGCTACTGTACTTACCCGAGCAATATTTACTGAAGGCTGCAAGTCAGTTGCAGCTGG AATGAATGCAATGGACTTGAGGCGTGGTATAACTTTGGCTGTTGATGCTGTGGTGACAAACTTGAAAAGCAGGGCACGGATGATTAGCACATCTGAGGAA ATAGCTCAGGTGGGGACAATATCAGCTAATGGGGAGAGAGAAATTGGCGAGTTAATTGCAAAAGCTATGGAGAAAGTTGGCAAAGAGGGAGTAATCACTA TCCAAGATGGCAAGACTTTATACAATGAGTTGGAAGTTGTTGAAGGAATGAAGCTTGACAGGGGGTACATATCTCCTTATTTCATAACAAACCAGAAGAA CCAAAAATGTGAACTCGATGATCCTCTCATTTTGATTCATGAGAAGAAAATCTCAAGTATACAATCTGTAGTTAAAGTATTAGAGTTGGCTTTAAAGAAA CAAAGACCTTTGTTGATTGTTGCCGAGGATGTTGAAAGTGATGCATTAGCAACTCTTATTTTAAATAAGCTCCGTGCTGGAGTCAAGGTATGTGCCATTA AAGCCCCTGGATTCGGTGAAAATAGGAAATCAGGCCTCCAAGATCTTGCAGTTCTTACAGGAGGATCTGTTATCACTGAAGAGCTGGGCTTGAATCTTGA GAAAGTGGATTTGGATTTGCTTGGTACATGCAAAAAGGTAACAATTTCCAAGGATGACACTGTCATTCTTGACGGAGCAGCCGACAAGAAAGCCCTTGAG GAAAGATGTGAGCAGATTAGGTCAGCAATTGATAATAGCACCTCAGATTATGACAAGGAAAAATTACAGGAAAGATTAGCCAAGCTTTCCGGGGGTGTTG CAGTGCTTAAGATCGGAGGAGCCAGTGAGGCGGAAGTTGGCGAGAAGAAGGATAGAGTGACAGATGCCTTGAATGCAACTAAGGCAGCTGTCGAGGAGGG CATAGTGCCAGGTGGTGGTGTTGCTCTTCTCTATGCATCGAAAGAGTTGGATAAACTTCAAACTGCCAACTTTGACCAAAAGATTGGTGTTCAGATTATC CAAAATGCCTTGAAGACACCAGTACACATAATTGCATCAAATGCGGGAGTTGAGGGTGCTGTTGTCGTTGGCAAACTATGGGAACAAGATAACCATGACC TTGGGTATGATGCAGCCAAAGGTGAATATGTTTATATGATTAAAGCTGGAATCATAGACCCATTGAAGGTGATTAGAACAGCCTTAGTTGATGCAGCCAG TGTGTCATCTTTGATGACAACAACAGAAGCTGTTATTGCTGAACTTCCAAAGGATGAAAAATCTGCTCCATCTATTCCACAAGGCATGGGTGGAATGGGT GGCATGGATTTCTAATCAGGTTTTTACTTTTGAATACAGAGAGTGTTGCTGAACTGAACCCATTTATAGTATTGTTGTTTCAATTGTTAATTGTTGTGAG TAGGCATCAATGTAATCAGTGAGAGAGTTATTGATTATAGATGTAGGATAACAAAATGCAACTTGCAATAATTCCAATACCAAGATGTTTGGAACAATGT TCAAGGAATTTGAGATGAATTGGAATTGGCCATTCATATTTTAATTATGACTTTTGAAAAATGAAAACTTTCAATTTTATATATCAACATTTCTTACTAG CACTATACCTTTAAAA BLAST |
Tissue | pods |
Gene name | LI_gene_187972; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_448242
Blastp | Chaperonin CPN60-2, mitochondrial from Cucurbita with 90.27% of identity |
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Blastx | Chaperonin CPN60-2, mitochondrial from Cucurbita with 90.27% of identity |
Eggnog | - |
Kegg | - |
CantataDB | Link to cantataDB annotations (CNT0001044) |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019449999.1) |
Pfam | TCP-1/cpn60 chaperonin family (PF00118.23) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |