Ll_transcript_448227

• Id Trinity: TRINITY_DN51837_c0_g1_i5
• Name Transcript: Ll_transcript_448227
• Sequence: CTCAAACTTGTTGACCATAAAACCCAAAACCCTAAAACCTGTTTCTTCTAGAGCCTTCTCTTTTCATAGCTTCCCTTCAAAAGAAACCTATCATCAGTTT TTGCCTGCAATTTGTTCAGCTCATTGTGTTTCTCAATTCCCTTTCATCCATTACTCTCAATCCACTTCATCATGTACCGTTTAGCCACTTCCCTTGCCTC CAAAGCTCGGATTGCTAGGAGCAGTAGTCAACAGATTGGAAGCAGGGTGAGTTGGAGCAGGAACTATGCTGCCAAAGATATTAAATTCGGCGTGGAGGCT CGGGCTCTGATGCTGAAGGGTGTTGAAGAGCTTGCTGATGCTGTCAAAGTAACCATGGGTCCTAAGGGGCGTAATGTGGTGATCGAGCAAAGTTTTGGTG CTCCTAAAGTTACAAAGGATGGAGTAACTGTTGCAAAGAGCATTGAATTCAAGAATAAAGTCAAGAATATCGGTGCTAGTCTTGTAAAGCAGGTTGCAAA TGCTACCAATGATGTGGCTGGTGATGGAACCACATGTGCTACAGTTCTTACCCGTGCAATATTTACGGAAGGGTGTAAATCAGTTGCAGCTGGAATGAAT GCAATGGACCTGAGGCGAGGTATAAATTTGGCTGTTGATGCTGTGGTAACAAGTCTTAAAAGCAGAGCACGGATGATTAGCACCTCTGAAGAAATAGCAC AGGTTGGGACAATATCAGCTAATGGAGAAAGAGAAATCGGTGAGTTAATTGCAAAAGCTATGGAGAAAGTTGGCAAAGAGGGCGTAATTACAATCTCAGA TGGCAAGACTTTATATAATGAGCTAGAAGTAGTAGAAGGAATGAAGCTTGACAGGGGCTACATTTCTCCATATTTCATAACAAACCAGAAAAATCAGAAA TGTGAACTTGAAGATCCTCTCATTCTAATCCATGAAAAGAAAATCTCAAGTATTAATGCTATCGTTAAAGTATTAGAGTTGGCTTTGAAGAGACAAAGAC CTTTATTGATTGTCGCTGAGGATGTGGAAAGTGATGCCCTTGCAACTCTTATTCTAAATAAGCTTCGTGCTGGAATCAAGGTGTGTGCTATTAAAGCCCC TGGTTTTGGTGAAAATAGGAAATCTGGTCTCCAGGATCTTGCTGTTCTTACAGGAAGTGAACTTATCACTGAAGAACTTGGCTTGAATCTTGAGAAAGTG GATCTGGGTATGCTTGGCACTTGCAAAAAGATAACAATTTCTAAAGATGATACTGTCATTCTTGACGGAGCTGGTGACAAGAAAGCGATTGAGGAAAGAG CTGAGCAGATTAGGTCAGCCATTGAAAATAGCACTTCGGATTATGACAAGGAAAAGCTACAGGAAAGATTAGCCAAGCTTTCCGGGGGTGTTGCAGTGCT TAAGATCGGAGGAGCCAGTGAGGCTGAAGTTGGTGAAAAGAAGGATAGAGTGACCGATGCATTAAATGCAACTAAGGCAGCTGTAGAGGAGGGCATAGTA CCAGGTGGTGGTGTTGCTCTTCTTTATGCATCAAACGAGCTGTCTAAGCTTCAAACTGCCAACTTTGATCAAAAGATTGGTGTCCAGATTATTCAAAATG CTTTAAAGACACCTGTCCACACAATCGCCTCAAATGCAGGAGTCGAGGGTGCTGTTGTTGTTGGCAAACTATTGGAACAGAATAACCCCGATATTGGATA TGACGCAGCTAAAGGTGAGTATGTTGATATGATTAAAGCCGGAATCATTGATCCATTGAAAGTTATCAGGACTGCCTTGGTTGATGCAGCCAGTGTATCA TCTTTGATGACAACAACTGAAGCTGTTGTGTATGAACTCCCAAAGGATGATGGAGATGCTCCTGCATTGGGTGGTGGCATGGATTATTAGAGGGCATTAC TGCACTGCCACTGTAACCTTTTTATTTTCATTTATCATAAGGCATTCATGTAACATAGTCAGAGATCAATTGTGTAGTTAGGAAAATTGGTGATTGTTGT TGCAATGGTTACAAGTACAAGTTACTTGGAATGATTTTTTACCTTCTCATTTATAACACATTGTTCCTCAGTGAAACTATAAGGGGTTGAGTGTGCCTTA AACTTCATTTTTCTATGAAGTTCAATGTTTCAATTTGGATACCTTCATGTGTTGATGTGGATCTTTTAAATTATGAATATTTGCAAATAGTATAAATATT AGTCTTTT
• Tissue: pods
• Gene name: LI_gene_187972;
• Additional information: details;

Expression of Ll_transcript_448227

FPKM

• PAB: 0.5
• PNAB: 28.7
• PS1: 18.2
• PS2: 12.5
• PS3: 13.6
• PW1: 20.3
• PW2: 9.5
• PW3: 6

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_448227

• Blastp: Chaperonin CPN60-2, mitochondrial from Cucurbita with 91.5% of identity
• Blastx: Chaperonin CPN60-2, mitochondrial from Cucurbita with 91.5% of identity
• Eggnog: -
• Kegg: -
• CantataDB: Link to cantataDB annotations (CNT0001044)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019461296.1)
• Pfam: TCP-1/cpn60 chaperonin family (PF00118.23)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;