Ll_transcript_446107

• Id Trinity: TRINITY_DN51838_c0_g1_i4
• Name Transcript: Ll_transcript_446107
• Sequence: GAATAAGCGAAGGGTGTGTGGATAGCAGTAATCTTCACTAGTTGTAAAATTGTAAGAGATTCATTGCTATACGGAAAATAACGCATAAATAAAACATTTT TTCATTTTCAAAATTTCATTTTATTTCTAAAATCTCAATCTCGTGTCTTCCATTTCACCATCGAATCGAGGGATACAGCAAAAACGGCGATCCAATCCAG CGTTTCTTTTTCACCGAAATCGAAACGCTGTTTCCGAGCATCACTTTCCTTCAGCTATTGTTCCTCGTCAATTCCCAATATTGGAAGGTTTTAATTGTTG ATTCTGGTCTAATCAACTTGTGGAGTTTTAATTCAAGTTCCAAACATATAGAGCCATGAGTTTTGTTTTTGGAGGAACAAGAGCAGATATAGAAAATGGA TTTCCAGGATTTATACCTCAGAGGCGTACATTGCGTGTTCATGCTGCACGTCCGAGTAATTCCAATTCTCTCACTTTTCTTGTAACAGTTCTCCTGTTAT TCATGATACTGAACTCTCAACAAATGTCACCAAATTTCATGCTCTGGCTGGTGCTTGGTGTTTTCTTGATGGCTACAATGTTAAGGATGTACGCGACATT TCAACAGCTTCAAGCGCAGGCCCAAGCTCATGCCGCAACAGCCAATGGCCTTCTTGGACACACAGAACTGCGGTTGCATATGCCACCATCAATAGCACTC ACAAGCCGAGGGCGGCTGCAAGGCCTCAGACTTCAGCTTGCACTTCTTGATCGAGAGTTCGATGATCTAGATTATGAAACTTTAAGAGCTCTGGATTCAG ATAATGTTTCTTCTGGATCTTCAATGACTGAGGAAGAGATCAATGCTCTTCCTGTCCACAAATACAAGGGTTCTGGTCCCCAAAGCAGTAGTTCCTCAAT GCAACAAGCTTCATCTTCCACATCTGCCGAGAAGAAGCAAGATCATTCAAACGCAACTGGGAGCATGAAAGTCTCTGATGATGAGCTCACTTGCAGCGTA TGTTTGGAGCAAGTTAATGTTGGAGATATACTCCGTAGCTTGCCCTGCTTGCATCAGTTTCACGCTAACTGCATTGATCCCTGGCTGCGGCAACAAGGGA CATGCCCTGTCTGTAAATTCCGAGCAGGATCTGGATGGAATGAAAATGGGCATGAGGATATTGCGGACATGGTTTGAATACCTCTATTTTGTATTTATAT GCGTGTGATTATAATATGGTATAGACTGTAGCTTTAACTTACCCTCGTCATGTATAAAAACCGTGGCTTATGACTAGTATTTGGGTAATTAGCCTGACAT AGGAATGACAGAAATACCATGTAAAAACTACAGAAGTTCACAGATTTTTTCCCCTATTGTAAGGACCAAGTTTCTTGGGCCATTCTAAAAGTATATAGTA TATGTTGTAACTATAGGTACTTAAAAGTATATCGTTTCAATTTGTACTTAAAAATATATGTTCCAACAATCCTTGCCATACACTTAAGAGAGTGCTGGGA AGTTTGTAAGGAAATGAAAGGAAAGGCATGGTATGGAATTAGGAGGAAGAAAAGGAAGTACTTGCGAGATAGGGAAGGGAGATTGAGATTTTATATCCCA TGTTTAGATGTATAAATTTTATAAGGTGAAGAAAGTGGAAGGTTATTTGAGATGTTTTATTTCAGCATCCGCAAGGGTCATACCAT
• Tissue: pods
• Gene name: LI_gene_187976;
• Additional information: details;

Expression of Ll_transcript_446107

FPKM

• PAB: 42.2
• PNAB: 11.9
• PS1: 18.5
• PS2: 11
• PS3: 16.8
• PW1: 14.8
• PW2: 19.2
• PW3: 22.5

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_446107

• Blastp: E3 ubiquitin-protein ligase SDIR1 from Arabidopsis with 74.64% of identity
• Blastx: E3 ubiquitin-protein ligase SDIR1 from Arabidopsis with 74.64% of identity
• Eggnog: zinc ion binding(ENOG41121N2)
• Kegg: Link to kegg annotations (AT3G55530)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019439459.1)
• Pfam: Ring finger domain (PF13639.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;