| Id Trinity | TRINITY_DN51838_c0_g1_i8 |
|---|---|
| Name Transcript | Ll_transcript_446121 |
| Sequence | GAATAAGCGAAGGGTGTGTGGATAGCAGTAATCTTCACTAGTTGTAAAATTGTAAGAGATTCATTGCTATACGGAAAATAACGCATAAATAAAACATTTT TTCATTTTCAAAATTTCATTTTATTTCTAAAATCTCAATCTCGTGTCTTCCATTTCACCATCGAATCGAGGGATACAGCAAAAACGGCGATCCAATCCAG CGTTTCTTTTTCACCGAAATCGAAACGCTGTTTCCGAGCATCACTTTCCTTCAGCTATTGTTCCTCGTCAATTCCCAATATTGGAAGGTTTTAATTGTTG ATTCTGGTCTAATCAACTTGTGGAGTTTTAATTCAAGTTCCAAACATATAGAGCCATGAGTTTTGTTTTTGGAGGAACAAGAGCAGATATAGAAAATGGA TTTCCAGGATTTATACCTCAGAGGCGTACATTGGTATGCATGTTGTGTATCGATTATCTGCATGAGTGATCTAATGTTGATGATTTATTGTTTGTGTTTC CCGGTTTTGTAACTAAAAGCATGATTAGATATGTAGCTTGTTTAACATAAACTAAAGCTTCATATATATTCCAACTTTTTCTTCAGCGTGTTCATGCTGC ACGTCCGAGTAATTCCAATTCTCTCACTTTTCTTGTAACAGGTATTAATGTTCTTAGGTATCATGTTTTGTTTTAGCATTTTGTGCAGACCACTTATCTT TTTCTATATCTTTTTTCCCAATCACAACTTCCTGCTTATATGTTCCAGTTCTCCTGTTATTCATGATACTGAACTCTCAACAAATGTCACCAAATTTCAT GCTCTGGCTGGTGCTTGGTGTTTTCTTGATGGCTACAATGTTAAGGATGTACGCGACATTTCAACAGCTTCAAGCGCAGGCCCAAGCTCATGCCGCAACA GCCAATGGCCTTCTTGGACACACAGAACTGCGGTTGCATATGCCACCATCAATAGCACTCACAAGCCGAGGGCGGCTGCAAGGCCTCAGACTTCAGCTTG CACTTCTTGATCGAGAGTTCGATGATCTAGATTATGAAACTTTAAGAGCTCTGGATTCAGATAATGTTTCTTCTGGATCTTCAATGACTGAGGAAGAGAT CAATGCTCTTCCTGTCCACAAATACAAGGGTTCTGGTCCCCAAAGCAGTAGTTCCTCAATGCAACAAGCTTCATCTTCCACATCTGCCGAGAAGAAGCAA GATCATTCAAACGCAACTGGGAGCATGAAAGTCTCTGATGATGAGCTCACTTGCAGCGTATGTTTGGAGCAAGTTAATGTTGGAGATATACTCCGTAGCT TGCCCTGCTTGCATCAGTTTCACGCTAACTGCATTGATCCCTGGCTGCGGCAACAAGGGACATGCCCTGTCTGTAAATTCCGAGCAGGATCTGGATGGAA TGAAAATGGGCATGAGGATATTGCGGACATGGTTTGAATACCTCTATTTTGTATTTATATGCGTGTGATTATAATATGGTATAGACTGTAGCTTTAACTT ACCCTCGTCATGTATAAAAACCGTGGCTTATGACTAGTATTTGGGTAATTAGCCTGACATAGGAATGACAGAAATACCATGTAAAAACTACAGAAGTTCA CAGATTTTTTCCCCTATTGTAAGGACCAAGTTTCTTGGGCCATTCTAAAAGTATATAGTATATGTTGTAACTATAGGTACTTAAAAGTATATCGTTTCAA TTTGTACTTAAAAATATATGTTCCAACAATCCTTGCCATACACTTAAGAGAGTGCTGGGAAGTTTGTAAGGAAATGAAAGGAAAGGCATGGTATGGAATT AGGAGGAAGAAAAGGAAGTACTTGCGAGATAGGGAAGGGAGATTGAGATTTTATATCCCATGTTTAGATGTATAAATTTTATAAGGTGAAGAAAGTGGAA GGTTATTTGAGATGTTTTATTTCAGCATCCGCAAGGGTCATACCAT BLAST |
| Tissue | pods |
| Gene name | LI_gene_187976; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_446121
| Blastp | E3 ubiquitin-protein ligase SDIR1 from Arabidopsis with 75.22% of identity |
|---|---|
| Blastx | E3 ubiquitin-protein ligase SDIR1 from Arabidopsis with 75.54% of identity |
| Eggnog | zinc ion binding(ENOG41121N2) |
| Kegg | Link to kegg annotations (AT3G55530) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019439459.1) |
| Pfam | Ring finger domain (PF13639.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |